Variant report

Variant	rs4141262
Chromosome Location	chr11:17705855-17705856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17705084..17707821-chr11:17711837..17714694,2	K562	blood:
2	chr11:17674426..17676272-chr11:17704010..17706690,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10766416	0.94[ASN][1000 genomes]
rs10766418	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10766419	0.88[EUR][1000 genomes]
rs10766421	0.84[EUR][1000 genomes]
rs10832841	0.80[EUR][1000 genomes]
rs10832842	0.94[ASN][1000 genomes]
rs10832844	0.85[EUR][1000 genomes]
rs11024375	0.88[EUR][1000 genomes]
rs11605964	0.81[EUR][1000 genomes]
rs12575678	0.92[ASN][1000 genomes]
rs12577406	0.87[ASN][1000 genomes]
rs16934638	0.94[ASN][1000 genomes]
rs17558336	0.87[ASN][1000 genomes]
rs28609365	0.83[ASN][1000 genomes]
rs28683112	0.88[EUR][1000 genomes]
rs2878806	1.00[CHB][hapmap]
rs3858493	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3858494	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3858495	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3858496	0.94[ASN][1000 genomes]
rs3858498	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3901370	1.00[CHB][hapmap]
rs3928366	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4081578	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs4141260	0.88[EUR][1000 genomes]
rs4141261	0.88[EUR][1000 genomes]
rs4756907	0.88[EUR][1000 genomes]
rs4757567	0.88[EUR][1000 genomes]
rs4757568	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs4757569	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs6416178	0.83[ASN][1000 genomes]
rs6416180	0.85[EUR][1000 genomes]
rs6486390	0.83[ASN][1000 genomes]
rs67265917	0.92[ASN][1000 genomes]
rs7128599	0.83[ASN][1000 genomes]
rs73420003	0.89[ASN][1000 genomes]
rs73420005	0.92[ASN][1000 genomes]
rs7478812	0.83[ASN][1000 genomes]
rs7481960	0.81[ASN][1000 genomes]
rs7937727	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17704000-17711600	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr11:17704200-17711600	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr11:17704400-17706200	Enhancers	Fetal Muscle Leg	muscle
4	chr11:17705000-17706200	Enhancers	Fetal Muscle Trunk	muscle
5	chr11:17705600-17706000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr11:17705600-17706400	Enhancers	Psoas Muscle	Psoas
7	chr11:17705600-17706400	Enhancers	Hela-S3	cervix
8	chr11:17705600-17707600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:17705600-17709400	Enhancers	HSMM	muscle
10	chr11:17705800-17707600	Weak transcription	HSMMtube	muscle

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