Variant report

Variant	rs3858496
Chromosome Location	chr11:17702776-17702777
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17701946..17705746-chr11:17707792..17711044,3	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10766416	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766420	0.94[EUR][1000 genomes]
rs10832842	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832845	0.88[EUR][1000 genomes]
rs10832851	0.84[EUR][1000 genomes]
rs10832852	0.85[EUR][1000 genomes]
rs11024384	0.85[EUR][1000 genomes]
rs11603216	0.85[EUR][1000 genomes]
rs11603221	0.85[EUR][1000 genomes]
rs12575678	0.98[ASN][1000 genomes]
rs12577406	0.92[ASN][1000 genomes]
rs12785437	0.85[EUR][1000 genomes]
rs16934638	1.00[ASN][1000 genomes]
rs17558336	0.92[ASN][1000 genomes]
rs2336849	0.85[EUR][1000 genomes]
rs28609365	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2878806	0.85[EUR][1000 genomes]
rs2878807	0.85[EUR][1000 genomes]
rs3858493	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858494	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858495	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858498	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858499	0.86[EUR][1000 genomes]
rs3858501	0.85[EUR][1000 genomes]
rs3858502	0.85[EUR][1000 genomes]
rs3858508	0.89[EUR][1000 genomes]
rs3890009	0.85[EUR][1000 genomes]
rs3901226	0.84[EUR][1000 genomes]
rs3901370	0.86[EUR][1000 genomes]
rs3911833	0.83[EUR][1000 genomes]
rs3928366	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4083362	0.85[EUR][1000 genomes]
rs4141262	0.94[ASN][1000 genomes]
rs61880586	0.90[EUR][1000 genomes]
rs6416178	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6486390	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67265917	0.98[ASN][1000 genomes]
rs7106809	0.93[EUR][1000 genomes]
rs7107526	0.80[EUR][1000 genomes]
rs7128599	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73420003	0.94[ASN][1000 genomes]
rs73420005	0.98[ASN][1000 genomes]
rs7478812	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7481960	0.86[ASN][1000 genomes]
rs7937727	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17699200-17704000	Weak transcription	HSMM	muscle

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