Variant report

Variant	rs61880586
Chromosome Location	chr11:17717541-17717542
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10766416	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10766420	0.92[EUR][1000 genomes]
rs10832842	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10832845	0.86[EUR][1000 genomes]
rs10832851	0.82[EUR][1000 genomes]
rs10832852	0.83[EUR][1000 genomes]
rs11024384	0.83[EUR][1000 genomes]
rs11603216	0.83[EUR][1000 genomes]
rs11603221	0.83[EUR][1000 genomes]
rs2336849	0.83[EUR][1000 genomes]
rs28609365	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3858493	0.90[EUR][1000 genomes]
rs3858494	0.90[EUR][1000 genomes]
rs3858495	0.90[EUR][1000 genomes]
rs3858496	0.90[EUR][1000 genomes]
rs3858498	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3858508	0.87[EUR][1000 genomes]
rs3890009	0.83[EUR][1000 genomes]
rs3901226	0.82[EUR][1000 genomes]
rs3911833	0.81[EUR][1000 genomes]
rs3928366	0.90[EUR][1000 genomes]
rs4083362	0.83[EUR][1000 genomes]
rs6416178	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6486390	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7106809	0.91[EUR][1000 genomes]
rs7128599	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7478812	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7937727	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv467717	chr11:17713507-17791822	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv553588	chr11:17713507-17791822	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17713200-17718000	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr11:17713200-17721800	Enhancers	Psoas Muscle	Psoas
3	chr11:17715200-17722000	Enhancers	HSMM	muscle
4	chr11:17716400-17718400	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr11:17716800-17718200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr11:17717000-17718000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
7	chr11:17717000-17718000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
8	chr11:17717000-17718000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
9	chr11:17717200-17717600	Bivalent Enhancer	Brain Hippocampus Middle	brain
10	chr11:17717200-17717600	Bivalent/Poised TSS	Right Ventricle	heart
11	chr11:17717200-17717600	Weak transcription	HSMMtube	muscle
12	chr11:17717200-17717800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:17717200-17717800	Bivalent Enhancer	Fetal Heart	heart
14	chr11:17717200-17718000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
15	chr11:17717200-17718000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
16	chr11:17717200-17718000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
17	chr11:17717200-17718000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:17717200-17718000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:17717200-17718200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
20	chr11:17717400-17717600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
21	chr11:17717400-17717600	Active TSS	Right Atrium	heart
22	chr11:17717400-17717800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:17717400-17717800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:17717400-17717800	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:17717400-17717800	Bivalent Enhancer	Brain Germinal Matrix	brain
26	chr11:17717400-17717800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr11:17717400-17717800	Enhancers	Pancreas	Pancrea
28	chr11:17717400-17718000	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:17717400-17719000	Bivalent Enhancer	Fetal Muscle Leg	muscle

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