Variant report

Variant	rs3858498
Chromosome Location	chr11:17705409-17705410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17701946..17705746-chr11:17707792..17711044,3	K562	blood:
2	chr11:17705084..17707821-chr11:17711837..17714694,2	K562	blood:
3	chr11:17674426..17676272-chr11:17704010..17706690,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10766416	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766420	0.94[EUR][1000 genomes]
rs10832842	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832845	0.88[EUR][1000 genomes]
rs10832851	0.84[EUR][1000 genomes]
rs10832852	0.85[EUR][1000 genomes]
rs11024384	0.85[EUR][1000 genomes]
rs11603216	0.85[EUR][1000 genomes]
rs11603221	0.85[EUR][1000 genomes]
rs12575678	0.98[ASN][1000 genomes]
rs12577406	0.92[ASN][1000 genomes]
rs12785437	0.85[EUR][1000 genomes]
rs16934638	1.00[ASN][1000 genomes]
rs17558336	0.92[ASN][1000 genomes]
rs2336849	0.85[EUR][1000 genomes]
rs28609365	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2878806	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs2878807	0.85[EUR][1000 genomes]
rs3858493	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858494	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858495	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858496	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858499	0.86[EUR][1000 genomes]
rs3858501	0.85[EUR][1000 genomes]
rs3858502	0.85[EUR][1000 genomes]
rs3858506	0.95[CEU][hapmap]
rs3858508	0.89[EUR][1000 genomes]
rs3890009	0.85[EUR][1000 genomes]
rs3901226	0.80[CEU][hapmap];0.84[EUR][1000 genomes]
rs3901370	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs3911833	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs3928366	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4083362	0.85[EUR][1000 genomes]
rs4141262	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4756912	0.95[CEU][hapmap]
rs4757568	1.00[CHB][hapmap]
rs4757569	1.00[CHB][hapmap]
rs4757570	0.95[CEU][hapmap]
rs61880586	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6416178	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6486390	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67265917	0.98[ASN][1000 genomes]
rs7106809	0.93[EUR][1000 genomes]
rs7107526	0.80[EUR][1000 genomes]
rs7109072	0.95[CEU][hapmap]
rs7128599	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73420003	0.94[ASN][1000 genomes]
rs73420005	0.98[ASN][1000 genomes]
rs7478812	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7481960	0.86[ASN][1000 genomes]
rs7937727	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17704000-17711600	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr11:17704200-17705600	Enhancers	HUVEC	blood vessel
3	chr11:17704200-17711600	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr11:17704400-17706200	Enhancers	Fetal Muscle Leg	muscle
5	chr11:17704600-17705600	Weak transcription	Psoas Muscle	Psoas
6	chr11:17704600-17705800	Enhancers	Placenta	Placenta
7	chr11:17704800-17705600	Flanking Active TSS	Hela-S3	cervix
8	chr11:17704800-17705600	Enhancers	Osteobl	bone
9	chr11:17704800-17705800	Enhancers	A549	lung
10	chr11:17704800-17705800	Enhancers	HSMMtube	muscle
11	chr11:17704800-17705800	Enhancers	NH-A	brain
12	chr11:17705000-17705600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:17705000-17705600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:17705000-17705800	Bivalent Enhancer	HepG2	liver
15	chr11:17705000-17706200	Enhancers	Fetal Muscle Trunk	muscle
16	chr11:17705200-17705600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:17705400-17705600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr11:17705400-17705600	Flanking Active TSS	HSMM	muscle

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