Variant report

Variant	rs10832844
Chromosome Location	chr11:17718623-17718624
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SERGEF-2	chr11:17718366-17719033	XLOC_009385
2	lnc-MYOD1-1	chr11:17718516-17719018	ENSG00000254586
3	lnc-MYOD1-1	chr11:17718516-17718844	ENSG00000254586
4	lnc-SERGEF-2	chr11:17718427-17718751	NONHSAT018242
5	lnc-SERGEF-2	chr11:17718366-17718751	NONHSAT018243

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10741731	0.81[EUR][1000 genomes]
rs10766418	0.93[EUR][1000 genomes]
rs10766419	0.95[EUR][1000 genomes]
rs10766421	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766423	0.88[ASN][1000 genomes]
rs10832837	0.85[EUR][1000 genomes]
rs10832841	0.84[EUR][1000 genomes]
rs11024364	0.82[EUR][1000 genomes]
rs11024367	0.82[EUR][1000 genomes]
rs11024368	0.82[EUR][1000 genomes]
rs11024375	0.94[EUR][1000 genomes]
rs11605964	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526551	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28683112	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs3858506	0.88[ASN][1000 genomes]
rs3858507	0.88[ASN][1000 genomes]
rs3935159	0.81[EUR][1000 genomes]
rs4081578	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4141260	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4141261	0.95[EUR][1000 genomes]
rs4141262	0.85[EUR][1000 genomes]
rs4756905	0.82[EUR][1000 genomes]
rs4756907	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4756910	0.88[ASN][1000 genomes]
rs4756912	0.88[ASN][1000 genomes]
rs4757565	0.85[EUR][1000 genomes]
rs4757567	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4757568	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4757569	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4757570	0.88[ASN][1000 genomes]
rs6416180	0.81[EUR][1000 genomes]
rs7123420	0.88[ASN][1000 genomes]
rs7395942	0.82[EUR][1000 genomes]
rs7483014	0.81[EUR][1000 genomes]
rs9633896	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv467717	chr11:17713507-17791822	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv553588	chr11:17713507-17791822	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17713200-17721800	Enhancers	Psoas Muscle	Psoas
2	chr11:17715200-17722000	Enhancers	HSMM	muscle
3	chr11:17717400-17719000	Bivalent Enhancer	Fetal Muscle Leg	muscle
4	chr11:17717600-17720000	Weak transcription	Right Atrium	heart
5	chr11:17717600-17721800	Enhancers	HSMMtube	muscle
6	chr11:17717800-17719200	Weak transcription	Pancreas	Pancrea
7	chr11:17718200-17719000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr11:17718400-17718800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:17718400-17718800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr11:17718600-17718800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:17718600-17718800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

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