Variant report

Variant	rs3858507
Chromosome Location	chr11:17720754-17720755
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10766420	0.83[EUR][1000 genomes]
rs10766421	0.88[ASN][1000 genomes]
rs10766423	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832844	0.88[ASN][1000 genomes]
rs10832845	0.86[EUR][1000 genomes]
rs11605964	0.88[ASN][1000 genomes]
rs12785437	0.87[EUR][1000 genomes]
rs12785942	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2336846	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2336847	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2336848	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2878806	0.87[EUR][1000 genomes]
rs2878807	0.87[EUR][1000 genomes]
rs3858499	0.86[EUR][1000 genomes]
rs3858501	0.87[EUR][1000 genomes]
rs3858502	0.87[EUR][1000 genomes]
rs3858506	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858508	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3901370	0.86[EUR][1000 genomes]
rs4081578	0.88[ASN][1000 genomes]
rs4403789	0.83[ASN][1000 genomes]
rs4756910	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756912	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756914	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4757570	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757574	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4757575	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6486393	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7101870	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7106809	0.84[EUR][1000 genomes]
rs7123420	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv467717	chr11:17713507-17791822	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv553588	chr11:17713507-17791822	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17713200-17721800	Enhancers	Psoas Muscle	Psoas
2	chr11:17715200-17722000	Enhancers	HSMM	muscle
3	chr11:17717600-17721800	Enhancers	HSMMtube	muscle
4	chr11:17719000-17720800	Enhancers	Fetal Muscle Trunk	muscle
5	chr11:17719000-17724400	Enhancers	Fetal Muscle Leg	muscle
6	chr11:17720400-17720800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr11:17720400-17721000	Enhancers	Fetal Lung	lung
8	chr11:17720400-17721000	Bivalent Enhancer	Fetal Stomach	stomach
9	chr11:17720600-17721200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr11:17720600-17721200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links