Variant report

Variant	rs16934614
Chromosome Location	chr9:16411184-16411185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:16409821..16411525-chr9:16413857..16415873,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16934607	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16934619	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16934621	0.81[JPT][hapmap]
rs16934641	0.83[JPT][hapmap]
rs2296862	0.81[JPT][hapmap]
rs2296863	0.83[JPT][hapmap]
rs2296864	0.81[JPT][hapmap]
rs4545191	1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs7020739	0.80[ASN][1000 genomes]
rs7021318	0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs7022640	0.83[JPT][hapmap]
rs7040533	0.98[ASN][1000 genomes]
rs7042237	0.86[CHB][hapmap]
rs7042297	0.82[ASN][1000 genomes]
rs7042654	0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs7850919	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs7863925	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16400600-16413800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:16405800-16416400	Weak transcription	HUVEC	blood vessel
3	chr9:16407000-16412800	Weak transcription	Ovary	ovary
4	chr9:16407200-16415800	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:16407200-16417000	Weak transcription	HSMM	muscle
6	chr9:16407400-16415800	Weak transcription	Fetal Kidney	kidney
7	chr9:16409800-16412000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:16410000-16411400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:16410000-16412000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:16410000-16412000	Flanking Active TSS	A549	lung
11	chr9:16410200-16411800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:16410200-16414600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr9:16410600-16411800	Enhancers	NHEK	skin
14	chr9:16410600-16413600	Enhancers	Fetal Lung	lung
15	chr9:16410800-16411200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:16410800-16411400	Enhancers	Osteobl	bone
17	chr9:16410800-16412000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:16410800-16415400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:16411000-16411200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr9:16411000-16411200	Enhancers	Fetal Intestine Large	intestine
21	chr9:16411000-16411200	Enhancers	NHDF-Ad	bronchial
22	chr9:16411000-16412000	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links