Variant report

Variant	rs16934607
Chromosome Location	chr9:16410409-16410410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10738437	1.00[JPT][hapmap]
rs12350242	1.00[JPT][hapmap]
rs1415474	1.00[JPT][hapmap]
rs16934614	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16934619	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16934816	1.00[JPT][hapmap]
rs16934855	1.00[JPT][hapmap]
rs2095657	1.00[JPT][hapmap]
rs4545191	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs7020739	0.82[ASN][1000 genomes]
rs7021318	0.80[ASN][1000 genomes]
rs7040533	1.00[ASN][1000 genomes]
rs7042297	0.83[ASN][1000 genomes]
rs7042654	0.83[ASN][1000 genomes]
rs7470623	1.00[JPT][hapmap]
rs7859395	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16400000-16411000	Weak transcription	NHLF	lung
2	chr9:16400600-16413800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:16405800-16416400	Weak transcription	HUVEC	blood vessel
4	chr9:16407000-16412800	Weak transcription	Ovary	ovary
5	chr9:16407200-16410800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:16407200-16415800	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:16407200-16417000	Weak transcription	HSMM	muscle
8	chr9:16407400-16415800	Weak transcription	Fetal Kidney	kidney
9	chr9:16409000-16410600	Weak transcription	Fetal Lung	lung
10	chr9:16409000-16410800	Weak transcription	Osteobl	bone
11	chr9:16409200-16410800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:16409800-16412000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:16410000-16411400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:16410000-16412000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:16410000-16412000	Flanking Active TSS	A549	lung
16	chr9:16410200-16410600	Flanking Active TSS	NHEK	skin
17	chr9:16410200-16411800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:16410200-16414600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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