Variant report

Variant	rs10738437
Chromosome Location	chr9:16581967-16581968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10116857	0.82[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10117448	0.82[CEU][hapmap]
rs10118895	1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10120281	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121959	0.84[EUR][1000 genomes]
rs10122372	1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.81[ASN][1000 genomes]
rs10123480	0.82[CEU][hapmap]
rs10125014	1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10511622	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs10733311	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10733312	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10738439	0.86[TSI][hapmap];0.90[EUR][1000 genomes]
rs10738440	1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10738441	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10738442	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10738443	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10756763	0.82[CEU][hapmap]
rs10756764	1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10756765	1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap];0.90[ASN][1000 genomes]
rs10756766	0.90[ASN][1000 genomes]
rs10756767	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10756768	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10756770	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10962484	0.89[GIH][hapmap]
rs10962492	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10962493	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs10962510	1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10962511	0.82[CEU][hapmap]
rs12000426	0.85[EUR][1000 genomes]
rs12002673	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs12004304	1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12337676	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12338548	0.82[CEU][hapmap]
rs12339625	0.85[ASW][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes]
rs12340504	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12343239	0.82[EUR][1000 genomes]
rs12343306	0.82[EUR][1000 genomes]
rs12350242	0.82[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352543	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs1337393	0.82[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1337400	0.82[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1415473	0.88[EUR][1000 genomes]
rs1415474	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs1415475	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1415476	0.82[CEU][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1538102	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16934607	1.00[JPT][hapmap]
rs16934816	1.00[JPT][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16934842	0.94[EUR][1000 genomes]
rs16934855	1.00[JPT][hapmap];0.80[YRI][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16934875	1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16934886	1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1927616	0.82[CEU][hapmap]
rs1927617	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs1927626	0.82[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1952345	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs1952346	0.82[CEU][hapmap]
rs2065937	0.85[EUR][1000 genomes]
rs2095657	1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2149159	0.87[EUR][1000 genomes]
rs2382808	0.82[CEU][hapmap]
rs2382809	0.82[CEU][hapmap]
rs2382810	0.82[CEU][hapmap]
rs28428651	0.89[AMR][1000 genomes]
rs28457730	0.89[AMR][1000 genomes]
rs28490464	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28501274	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28648047	0.89[AMR][1000 genomes]
rs28651010	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28733737	0.88[EUR][1000 genomes]
rs2891072	0.82[CEU][hapmap]
rs34950291	0.81[ASN][1000 genomes]
rs4466493	1.00[ASN][1000 genomes]
rs4961725	0.85[MEX][hapmap];0.93[TSI][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4961726	0.81[ASN][1000 genomes]
rs6475059	0.82[CEU][hapmap]
rs6475060	0.82[CEU][hapmap]
rs6475062	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs6475063	0.82[EUR][1000 genomes]
rs7018743	0.81[EUR][1000 genomes]
rs7018877	1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7019016	1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7019105	1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7019625	0.82[AMR][1000 genomes]
rs7032239	0.81[EUR][1000 genomes]
rs7032772	0.85[EUR][1000 genomes]
rs7036282	0.86[AMR][1000 genomes]
rs7048399	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7048805	0.89[AMR][1000 genomes]
rs7049170	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs725011	0.82[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73417477	0.80[AMR][1000 genomes]
rs73421425	0.90[ASN][1000 genomes]
rs7350234	0.82[CEU][hapmap]
rs7470623	0.82[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7850123	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7854979	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7856477	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs7858025	1.00[CEU][hapmap]
rs7859395	1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7859971	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7863885	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7870380	0.82[CEU][hapmap]
rs7870508	1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7870730	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7873338	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943745	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv528443	chr9:16570142-16581967	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16569800-16582400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:16571400-16582000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr9:16572800-16582600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:16573200-16586400	Weak transcription	Pancreas	Pancrea
5	chr9:16573200-16591800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr9:16575400-16582400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:16575800-16582400	Weak transcription	HSMMtube	muscle
8	chr9:16575800-16585800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:16576000-16582000	Weak transcription	NHLF	lung
10	chr9:16576000-16586400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr9:16576000-16601600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr9:16576200-16583200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr9:16576400-16582200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr9:16576400-16582600	Weak transcription	Fetal Lung	lung
15	chr9:16576400-16590800	Weak transcription	HSMM	muscle
16	chr9:16576400-16601400	Weak transcription	NHDF-Ad	bronchial
17	chr9:16576600-16582000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr9:16576600-16584200	Weak transcription	HUVEC	blood vessel
19	chr9:16578000-16594200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:16578600-16582400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr9:16578600-16585200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr9:16580000-16588200	Weak transcription	NH-A	brain
23	chr9:16580400-16582200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr9:16580800-16583000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:16581000-16585000	Enhancers	Colon Smooth Muscle	Colon
26	chr9:16581400-16582000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr9:16581400-16582600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr9:16581600-16582800	Strong transcription	Fetal Muscle Leg	muscle
29	chr9:16581600-16586000	Enhancers	Rectal Smooth Muscle	rectum
30	chr9:16581800-16582600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:16581800-16582800	Flanking Active TSS	Stomach Smooth Muscle	stomach
32	chr9:16581800-16582800	Strong transcription	Osteobl	bone
33	chr9:16581800-16583000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr9:16581800-16583200	Enhancers	Fetal Stomach	stomach
35	chr9:16581800-16583400	Enhancers	Ovary	ovary

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