Variant report

Variant	rs7019625
Chromosome Location	chr9:16635419-16635420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10116857	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10118895	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10120281	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10122372	0.90[EUR][1000 genomes]
rs10124530	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10125014	0.84[EUR][1000 genomes]
rs10733311	0.82[AMR][1000 genomes]
rs10733312	0.86[AMR][1000 genomes]
rs10738437	0.82[AMR][1000 genomes]
rs10738440	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10738441	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10738442	0.85[AMR][1000 genomes]
rs10738443	0.85[AMR][1000 genomes]
rs10756764	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10756765	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10756766	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10756767	0.85[AMR][1000 genomes]
rs10756768	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10756770	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10962484	0.86[EUR][1000 genomes]
rs10962510	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12000426	0.81[EUR][1000 genomes]
rs12004304	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12337676	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12339625	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12340504	0.82[EUR][1000 genomes]
rs12350242	0.84[EUR][1000 genomes]
rs1337393	0.81[AMR][1000 genomes]
rs1337400	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1415475	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1415476	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1538102	0.93[EUR][1000 genomes]
rs16934816	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16934842	0.84[EUR][1000 genomes]
rs16934855	0.93[EUR][1000 genomes]
rs16934886	0.93[EUR][1000 genomes]
rs17738890	0.88[EUR][1000 genomes]
rs1927626	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2065937	0.81[EUR][1000 genomes]
rs2095657	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28428651	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28457730	0.85[AMR][1000 genomes]
rs28490464	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28501274	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28648047	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28651010	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4466493	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4961725	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4961726	0.85[AMR][1000 genomes]
rs56218971	0.88[EUR][1000 genomes]
rs59379949	0.88[EUR][1000 genomes]
rs7018743	0.93[EUR][1000 genomes]
rs7018877	0.86[EUR][1000 genomes]
rs7019016	0.86[EUR][1000 genomes]
rs7019105	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7032239	0.93[EUR][1000 genomes]
rs7032772	0.88[EUR][1000 genomes]
rs7034606	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7035303	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7036282	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7048399	0.85[AMR][1000 genomes]
rs7048805	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs725011	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73417477	0.86[EUR][1000 genomes]
rs73421425	0.85[AMR][1000 genomes]
rs7470623	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7854979	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7859395	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7859971	0.82[AMR][1000 genomes]
rs7870508	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7870730	0.93[EUR][1000 genomes]
rs7873338	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv430000	chr9:16603483-16671045	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16627000-16636600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:16627200-16637000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:16629000-16640600	Weak transcription	HSMMtube	muscle
4	chr9:16629200-16637200	Weak transcription	Fetal Stomach	stomach
5	chr9:16629200-16642200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:16629400-16640400	Weak transcription	HSMM	muscle
7	chr9:16629600-16635800	Weak transcription	Ovary	ovary
8	chr9:16629600-16635800	Weak transcription	NHDF-Ad	bronchial
9	chr9:16629600-16637400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:16629600-16638000	Weak transcription	Osteobl	bone
11	chr9:16629600-16653600	Weak transcription	HUVEC	blood vessel
12	chr9:16630000-16636200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:16630000-16639600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:16630000-16642400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr9:16630200-16635800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:16630400-16637400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:16630400-16640600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr9:16632000-16637000	Weak transcription	NHEK	skin
19	chr9:16632800-16635800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr9:16634000-16636200	Enhancers	NHLF	lung
21	chr9:16634000-16638200	Enhancers	Colon Smooth Muscle	Colon
22	chr9:16634400-16637200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr9:16635200-16636000	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr9:16635200-16636000	Enhancers	Fetal Lung	lung
25	chr9:16635200-16637400	Enhancers	Stomach Smooth Muscle	stomach

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