Variant report

Variant	rs10733311
Chromosome Location	chr9:16575478-16575479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10116857	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10118895	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10120281	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122372	0.81[ASN][1000 genomes]
rs10125014	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10733312	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10738437	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10738439	0.82[EUR][1000 genomes]
rs10738440	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10738441	0.90[ASN][1000 genomes]
rs10738442	0.90[ASN][1000 genomes]
rs10738443	0.90[ASN][1000 genomes]
rs10756764	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10756765	0.90[ASN][1000 genomes]
rs10756766	0.90[ASN][1000 genomes]
rs10756767	0.90[ASN][1000 genomes]
rs10756768	0.90[ASN][1000 genomes]
rs10756770	0.90[ASN][1000 genomes]
rs10962510	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12004304	1.00[ASN][1000 genomes]
rs12337676	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12339625	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs12340504	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12350242	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352543	0.88[AFR][1000 genomes]
rs1337393	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1337400	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1415475	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1415476	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1538102	0.81[ASN][1000 genomes]
rs16934816	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16934842	0.82[EUR][1000 genomes]
rs16934855	0.90[ASN][1000 genomes]
rs16934875	0.81[ASN][1000 genomes]
rs16934886	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1927626	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2095657	0.90[ASN][1000 genomes]
rs2149159	0.92[EUR][1000 genomes]
rs28428651	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs28457730	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs28490464	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28501274	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28648047	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs28651010	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34950291	0.81[ASN][1000 genomes]
rs4466493	1.00[ASN][1000 genomes]
rs4961725	0.85[AMR][1000 genomes]
rs4961726	0.81[ASN][1000 genomes]
rs7018877	0.90[ASN][1000 genomes]
rs7019016	0.90[ASN][1000 genomes]
rs7019105	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7019625	0.82[AMR][1000 genomes]
rs7036282	0.86[AMR][1000 genomes]
rs7048399	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7048805	0.96[AMR][1000 genomes]
rs7049170	0.90[ASN][1000 genomes]
rs725011	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73417477	0.80[AMR][1000 genomes]
rs73421425	0.90[ASN][1000 genomes]
rs7470623	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7854979	0.90[ASN][1000 genomes]
rs7859395	1.00[ASN][1000 genomes]
rs7859971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7870508	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7870730	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7873338	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv528443	chr9:16570142-16581967	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16556400-16575600	Weak transcription	HSMM	muscle
2	chr9:16569800-16582400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:16570800-16575800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:16571400-16582000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr9:16571800-16575600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr9:16572000-16581800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:16572400-16575600	Weak transcription	Adipose Nuclei	Adipose
8	chr9:16572600-16575600	Weak transcription	Osteobl	bone
9	chr9:16572800-16575600	Weak transcription	Fetal Lung	lung
10	chr9:16572800-16575800	Weak transcription	NHDF-Ad	bronchial
11	chr9:16572800-16581400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:16572800-16581800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:16572800-16582600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:16573000-16575600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr9:16573000-16575600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr9:16573000-16575800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr9:16573200-16575600	Weak transcription	Colonic Mucosa	Colon
18	chr9:16573200-16586400	Weak transcription	Pancreas	Pancrea
19	chr9:16573200-16591800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr9:16574600-16580000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr9:16574800-16575600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:16574800-16575600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr9:16574800-16576400	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr9:16574800-16576400	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr9:16574800-16576600	Enhancers	Fetal Stomach	stomach
26	chr9:16575000-16575600	Enhancers	Colon Smooth Muscle	Colon
27	chr9:16575000-16575600	Enhancers	Stomach Smooth Muscle	stomach
28	chr9:16575000-16576000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:16575000-16576200	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr9:16575000-16576600	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr9:16575200-16575800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr9:16575200-16575800	Enhancers	Placenta	Placenta
33	chr9:16575200-16576000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr9:16575200-16576000	Enhancers	Ovary	ovary
35	chr9:16575200-16576000	Enhancers	Rectal Smooth Muscle	rectum
36	chr9:16575200-16576000	Enhancers	NHLF	lung
37	chr9:16575200-16576200	Enhancers	Fetal Kidney	kidney
38	chr9:16575200-16576400	Enhancers	A549	lung
39	chr9:16575200-16578800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr9:16575400-16575600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr9:16575400-16575800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr9:16575400-16575800	Enhancers	Muscle Satellite Cultured Cells	--
43	chr9:16575400-16575800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr9:16575400-16575800	Enhancers	HSMMtube	muscle
45	chr9:16575400-16576000	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr9:16575400-16576200	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr9:16575400-16576400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr9:16575400-16582400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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