Variant report

Variant	rs7873338
Chromosome Location	chr9:16606831-16606832
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10116857	0.91[EUR][1000 genomes]
rs10118895	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10120002	0.83[EUR][1000 genomes]
rs10120281	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121959	0.81[EUR][1000 genomes]
rs10122372	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10123515	0.85[EUR][1000 genomes]
rs10124530	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10125014	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10511622	0.85[EUR][1000 genomes]
rs10733311	1.00[ASN][1000 genomes]
rs10733312	0.85[EUR][1000 genomes]
rs10738437	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10738439	0.80[EUR][1000 genomes]
rs10738440	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10738441	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10738442	0.90[ASN][1000 genomes]
rs10738443	0.90[ASN][1000 genomes]
rs10756764	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10756765	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10756766	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10756767	0.90[ASN][1000 genomes]
rs10756768	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10756770	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10962484	0.93[EUR][1000 genomes]
rs10962493	0.80[EUR][1000 genomes]
rs10962510	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12000426	0.83[EUR][1000 genomes]
rs12002673	0.80[EUR][1000 genomes]
rs12004304	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12337676	0.83[EUR][1000 genomes]
rs12339625	0.93[EUR][1000 genomes]
rs12340504	0.84[EUR][1000 genomes]
rs12343239	0.80[EUR][1000 genomes]
rs12343306	0.80[EUR][1000 genomes]
rs12350242	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352543	0.80[EUR][1000 genomes]
rs1337393	0.85[EUR][1000 genomes]
rs1337400	0.83[EUR][1000 genomes]
rs1415473	0.85[EUR][1000 genomes]
rs1415475	0.89[EUR][1000 genomes]
rs1415476	0.83[EUR][1000 genomes]
rs1538102	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16934816	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16934842	0.91[EUR][1000 genomes]
rs16934855	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16934875	0.81[ASN][1000 genomes]
rs16934886	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17738890	0.90[EUR][1000 genomes]
rs1927626	0.83[EUR][1000 genomes]
rs2065937	0.83[EUR][1000 genomes]
rs2095657	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28428651	0.93[EUR][1000 genomes]
rs28457730	0.84[EUR][1000 genomes]
rs28490464	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28501274	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28648047	0.93[EUR][1000 genomes]
rs28651010	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28733737	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34950291	0.81[ASN][1000 genomes]
rs4466493	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4961725	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4961726	0.81[ASN][1000 genomes]
rs56218971	0.90[EUR][1000 genomes]
rs59379949	0.85[EUR][1000 genomes]
rs6475062	0.80[EUR][1000 genomes]
rs6475063	0.80[EUR][1000 genomes]
rs7018743	0.95[EUR][1000 genomes]
rs7018877	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7019016	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7019105	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7019625	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7032239	0.95[EUR][1000 genomes]
rs7032772	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7034606	0.89[AMR][1000 genomes]
rs7035303	0.89[AMR][1000 genomes]
rs7036282	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7048399	0.85[EUR][1000 genomes]
rs7048805	0.93[EUR][1000 genomes]
rs7049170	0.90[ASN][1000 genomes]
rs725011	0.91[EUR][1000 genomes]
rs73417477	0.93[EUR][1000 genomes]
rs73421425	0.90[ASN][1000 genomes]
rs7470623	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7854979	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7859395	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7859971	0.84[EUR][1000 genomes]
rs7862214	0.83[EUR][1000 genomes]
rs7863885	0.80[EUR][1000 genomes]
rs7870508	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7870730	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv524264	chr9:16596071-16611692	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv430000	chr9:16603483-16671045	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16583200-16611200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:16595000-16611200	Weak transcription	NHLF	lung
3	chr9:16597600-16610800	Weak transcription	Fetal Stomach	stomach
4	chr9:16598800-16608200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:16598800-16611400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:16599000-16607000	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:16599000-16612200	Weak transcription	Osteobl	bone
8	chr9:16599000-16612600	Weak transcription	HSMM	muscle
9	chr9:16602200-16607800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr9:16602400-16608000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr9:16602600-16608800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr9:16602800-16608600	Weak transcription	Ovary	ovary
13	chr9:16602800-16608800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr9:16602800-16612400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:16603200-16612600	Weak transcription	HUVEC	blood vessel
16	chr9:16604600-16608800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:16605600-16607600	Weak transcription	Fetal Lung	lung
18	chr9:16606200-16613600	Weak transcription	HSMMtube	muscle
19	chr9:16606200-16615000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr9:16606400-16607200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:16606600-16607400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:16606800-16607000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:16606800-16610000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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