Variant report

Variant	rs10738442
Chromosome Location	chr9:16614330-16614331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10118895	1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10120281	0.90[ASN][1000 genomes]
rs10122372	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10124530	0.90[YRI][hapmap];0.82[AMR][1000 genomes]
rs10125014	1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10733311	0.90[ASN][1000 genomes]
rs10738437	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10738440	1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10738441	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10738443	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10756764	1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10756765	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10756766	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10756767	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10756768	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10756770	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10962510	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12004304	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12350242	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1415472	0.80[AMR][1000 genomes]
rs1415474	1.00[JPT][hapmap]
rs1538102	1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16934816	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16934855	1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16934875	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16934886	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2095657	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28490464	0.90[ASN][1000 genomes]
rs28501274	0.90[ASN][1000 genomes]
rs28651010	0.90[ASN][1000 genomes]
rs34950291	0.90[ASN][1000 genomes]
rs4466493	0.90[ASN][1000 genomes]
rs4961726	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7018877	1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7019016	1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7019105	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7019625	0.85[AMR][1000 genomes]
rs7032772	0.85[AMR][1000 genomes]
rs7034606	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7035303	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7036282	0.82[AMR][1000 genomes]
rs7049170	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7470257	0.81[AFR][1000 genomes]
rs7470623	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7854979	1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7859395	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7870508	1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7870730	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7873338	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv430000	chr9:16603483-16671045	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16606200-16615000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:16607000-16618400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:16608400-16618600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:16609600-16618000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:16609600-16619800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr9:16610200-16614400	Enhancers	NHDF-Ad	bronchial
7	chr9:16611200-16615200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr9:16611200-16618000	Weak transcription	Fetal Stomach	stomach
9	chr9:16611400-16615600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr9:16611400-16626400	Weak transcription	Aorta	Aorta
11	chr9:16611600-16618800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr9:16611800-16619000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr9:16611800-16619600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr9:16612600-16614600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr9:16612600-16618400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:16612800-16618800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:16613000-16617800	Weak transcription	Colon Smooth Muscle	Colon
18	chr9:16613000-16619600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr9:16613000-16624800	Weak transcription	NH-A	brain
20	chr9:16613200-16614600	Weak transcription	HUVEC	blood vessel
21	chr9:16613200-16618400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr9:16613200-16624800	Weak transcription	A549	lung
23	chr9:16613400-16619000	Weak transcription	Osteobl	bone
24	chr9:16613600-16614400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr9:16613600-16615400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr9:16613800-16614800	Weak transcription	Ovary	ovary
27	chr9:16613800-16625600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr9:16614000-16619200	Weak transcription	HSMMtube	muscle
29	chr9:16614000-16624200	Weak transcription	HSMM	muscle
30	chr9:16614000-16624600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:16614200-16615800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr9:16614200-16618400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:16614200-16619200	Weak transcription	NHLF	lung

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