Variant report

Variant	rs10124530
Chromosome Location	chr9:16630598-16630599
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10116857	0.82[EUR][1000 genomes]
rs10118895	1.00[CEU][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes]
rs10120281	0.82[EUR][1000 genomes]
rs10122372	0.88[EUR][1000 genomes]
rs10125014	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10733312	0.82[AMR][1000 genomes]
rs10738440	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10738441	0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10738442	0.90[YRI][hapmap];0.82[AMR][1000 genomes]
rs10738443	0.90[YRI][hapmap];0.82[AMR][1000 genomes]
rs10756764	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10756765	0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10756766	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10756767	0.90[YRI][hapmap];0.82[AMR][1000 genomes]
rs10756768	0.97[YRI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10756770	0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10962484	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10962510	0.93[AMR][1000 genomes]
rs12000426	1.00[CEU][hapmap]
rs12004304	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12339625	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12350242	0.82[EUR][1000 genomes]
rs1337400	0.82[AMR][1000 genomes]
rs1415475	0.81[EUR][1000 genomes]
rs1415476	0.82[AMR][1000 genomes]
rs1538102	0.81[YRI][hapmap];0.91[EUR][1000 genomes]
rs16934816	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16934842	0.82[EUR][1000 genomes]
rs16934855	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs16934886	0.80[YRI][hapmap];0.91[EUR][1000 genomes]
rs17738890	0.86[EUR][1000 genomes]
rs1927626	0.82[AMR][1000 genomes]
rs2095657	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs28428651	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28457730	0.82[AMR][1000 genomes]
rs28490464	0.82[EUR][1000 genomes]
rs28501274	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28648047	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28651010	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4466493	0.81[EUR][1000 genomes]
rs4961725	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4961726	0.89[AMR][1000 genomes]
rs56218971	0.86[EUR][1000 genomes]
rs59379949	0.86[EUR][1000 genomes]
rs7018743	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7018877	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7019016	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7019105	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7019625	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7032239	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7032523	1.00[CEU][hapmap]
rs7032772	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7034606	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7035303	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7036282	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7048399	0.82[AMR][1000 genomes]
rs7048805	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs725011	0.82[EUR][1000 genomes]
rs73417477	0.84[EUR][1000 genomes]
rs73421425	0.82[AMR][1000 genomes]
rs7470623	0.82[EUR][1000 genomes]
rs7854979	1.00[CEU][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7859395	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7870508	1.00[CEU][hapmap];0.89[YRI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7870730	0.91[EUR][1000 genomes]
rs7873338	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv430000	chr9:16603483-16671045	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16627000-16636600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:16627200-16631800	Weak transcription	NHEK	skin
3	chr9:16627200-16637000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:16628800-16630600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr9:16629000-16635200	Weak transcription	Fetal Lung	lung
6	chr9:16629000-16640600	Weak transcription	HSMMtube	muscle
7	chr9:16629200-16637200	Weak transcription	Fetal Stomach	stomach
8	chr9:16629200-16642200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:16629400-16640400	Weak transcription	HSMM	muscle
10	chr9:16629600-16634000	Weak transcription	NHLF	lung
11	chr9:16629600-16635800	Weak transcription	Ovary	ovary
12	chr9:16629600-16635800	Weak transcription	NHDF-Ad	bronchial
13	chr9:16629600-16637400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:16629600-16638000	Weak transcription	Osteobl	bone
15	chr9:16629600-16653600	Weak transcription	HUVEC	blood vessel
16	chr9:16630000-16636200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:16630000-16639600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:16630000-16642400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr9:16630200-16633600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr9:16630200-16634000	Weak transcription	Colon Smooth Muscle	Colon
21	chr9:16630200-16635800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:16630400-16637400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr9:16630400-16640600	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links