Variant report

Variant	rs16934816
Chromosome Location	chr9:16568734-16568735
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10116857	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10118895	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10120002	0.84[EUR][1000 genomes]
rs10120281	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10121959	0.81[EUR][1000 genomes]
rs10122372	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10123515	0.86[EUR][1000 genomes]
rs10124530	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10125014	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511622	0.81[EUR][1000 genomes]
rs10733311	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10733312	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10738437	1.00[JPT][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10738440	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10738441	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10738442	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10738443	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10756764	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10756765	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10756766	1.00[ASN][1000 genomes]
rs10756767	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10756768	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10756770	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10962484	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10962510	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12000426	1.00[CEU][hapmap]
rs12004304	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12337676	0.89[AMR][1000 genomes]
rs12339625	1.00[CEU][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12350242	1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12352543	0.82[YRI][hapmap];0.84[AFR][1000 genomes]
rs1337393	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1337400	0.85[AMR][1000 genomes]
rs1415473	0.81[EUR][1000 genomes]
rs1415474	1.00[JPT][hapmap]
rs1415475	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1415476	0.85[AMR][1000 genomes]
rs1538102	1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16934607	1.00[JPT][hapmap]
rs16934842	0.87[EUR][1000 genomes]
rs16934855	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16934875	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs16934886	1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17738890	0.91[EUR][1000 genomes]
rs1927626	0.85[AMR][1000 genomes]
rs1952345	0.82[EUR][1000 genomes]
rs2095657	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28428651	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28457730	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28490464	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28501274	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28648047	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28651010	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28733737	0.81[EUR][1000 genomes]
rs34950291	0.90[ASN][1000 genomes]
rs4466493	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4961725	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4961726	0.90[ASN][1000 genomes]
rs56170891	0.80[AFR][1000 genomes]
rs56218971	0.91[EUR][1000 genomes]
rs59379949	0.81[EUR][1000 genomes]
rs7018743	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7018877	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7019016	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7019105	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7019625	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7032239	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7032523	1.00[CEU][hapmap]
rs7032772	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7035303	0.81[AMR][1000 genomes]
rs7036282	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7048399	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7048805	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7049170	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs725011	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73417477	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73421425	1.00[ASN][1000 genomes]
rs7470623	1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7854979	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7859395	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7859971	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7862214	0.84[EUR][1000 genomes]
rs7870508	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7870730	1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7873338	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16552800-16570200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr9:16552800-16571000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr9:16552800-16571400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:16553000-16570200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:16553000-16575200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr9:16556400-16569200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:16556400-16570600	Weak transcription	NHLF	lung
8	chr9:16556400-16575600	Weak transcription	HSMM	muscle
9	chr9:16560200-16571200	Weak transcription	Ovary	ovary
10	chr9:16560200-16571400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:16560200-16571600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr9:16564200-16570600	Weak transcription	Osteobl	bone
13	chr9:16564600-16570600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:16566600-16573000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr9:16567800-16570000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr9:16567800-16570000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr9:16568000-16569600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr9:16568000-16570400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:16568200-16569800	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr9:16568400-16569600	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr9:16568400-16570000	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr9:16568600-16568800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr9:16568600-16568800	Enhancers	Rectal Smooth Muscle	rectum
24	chr9:16568600-16569800	Enhancers	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links