Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10511617	1.00[EUR][1000 genomes]
rs16934509	1.00[EUR][1000 genomes]
rs16934607	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16934614	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs16934619	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs16934621	0.81[JPT][hapmap]
rs16934624	1.00[EUR][1000 genomes]
rs16934641	0.83[JPT][hapmap]
rs16934651	1.00[EUR][1000 genomes]
rs16934678	1.00[EUR][1000 genomes]
rs2296862	0.81[JPT][hapmap]
rs2296863	0.83[JPT][hapmap]
rs2296864	0.81[JPT][hapmap]
rs28379300	1.00[EUR][1000 genomes]
rs4545191	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs6475051	1.00[EUR][1000 genomes]
rs6475055	1.00[EUR][1000 genomes]
rs7020739	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7021318	0.83[JPT][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7022640	0.83[JPT][hapmap];1.00[EUR][1000 genomes]
rs7042237	0.86[CHB][hapmap]
rs7042297	0.83[ASN][1000 genomes]
rs7042654	0.80[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73413306	1.00[EUR][1000 genomes]
rs73413310	1.00[EUR][1000 genomes]
rs73645960	1.00[EUR][1000 genomes]
rs7846746	1.00[EUR][1000 genomes]
rs7850919	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs7863925	0.86[CHB][hapmap]
rs7867641	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16392000-16406800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:16394000-16406800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:16400000-16411000	Weak transcription	NHLF	lung
4	chr9:16400600-16405200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:16400600-16410200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:16400600-16413800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:16401000-16406800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:16401000-16408800	Weak transcription	A549	lung
9	chr9:16404000-16405600	Weak transcription	Primary monocytes fromperipheralblood	blood

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