Variant report

Variant	rs16934678
Chromosome Location	chr9:16446253-16446254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10511617	1.00[EUR][1000 genomes]
rs16934509	1.00[EUR][1000 genomes]
rs16934624	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16934651	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6475051	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6475055	1.00[EUR][1000 genomes]
rs7020739	1.00[EUR][1000 genomes]
rs7021318	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7022640	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7031782	1.00[MEX][hapmap]
rs7035219	0.87[AMR][1000 genomes]
rs7040533	1.00[EUR][1000 genomes]
rs7042654	1.00[EUR][1000 genomes]
rs73413306	1.00[EUR][1000 genomes]
rs73413310	1.00[EUR][1000 genomes]
rs73645960	1.00[EUR][1000 genomes]
rs7846746	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7864491	0.87[AMR][1000 genomes]
rs7867641	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7872124	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16421800-16460400	Weak transcription	Aorta	Aorta
2	chr9:16432600-16450600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:16437400-16459200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:16437600-16450600	Weak transcription	Fetal Stomach	stomach
5	chr9:16437600-16450600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:16438800-16458800	Weak transcription	HSMM	muscle
7	chr9:16442800-16448200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr9:16442800-16453800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:16442800-16455800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:16443000-16448400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:16443000-16449800	Weak transcription	Ovary	ovary
12	chr9:16443200-16447800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr9:16443200-16448400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:16443200-16449400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr9:16443400-16448400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr9:16443600-16448200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr9:16444600-16447000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr9:16444800-16448600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr9:16445000-16447000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:16445200-16446400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:16445200-16447000	Enhancers	Fetal Lung	lung
22	chr9:16445400-16446400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr9:16445600-16446400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr9:16445600-16446400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr9:16445800-16446400	Enhancers	A549	lung
26	chr9:16445800-16453600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr9:16446000-16458800	Weak transcription	NHLF	lung
28	chr9:16446200-16447200	Weak transcription	Colon Smooth Muscle	Colon
29	chr9:16446200-16447400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr9:16446200-16448000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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