Variant report

Variant	rs16938176
Chromosome Location	chr11:45188232-45188233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45167324..45169317-chr11:45187434..45189028,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000019485	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1078929	0.91[AFR][1000 genomes]
rs55909799	0.91[AFR][1000 genomes]
rs58370095	0.87[AFR][1000 genomes]
rs61397395	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825852	chr11:45141386-45228580	Bivalent/Poised TSS Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv541025	chr11:45154352-45193352	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv1048493	chr11:45166054-45205695	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45170000-45190000	Weak transcription	Primary B cells from cord blood	blood
2	chr11:45172400-45190000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:45180000-45193000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:45181600-45193600	Weak transcription	Fetal Intestine Large	intestine
5	chr11:45183600-45200400	Weak transcription	Esophagus	oesophagus
6	chr11:45183800-45190400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr11:45183800-45190800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:45183800-45201200	Weak transcription	Gastric	stomach
9	chr11:45184200-45188400	Strong transcription	Fetal Intestine Small	intestine
10	chr11:45184200-45190000	Weak transcription	Fetal Lung	lung
11	chr11:45184800-45190000	Weak transcription	Pancreas	Pancrea
12	chr11:45185600-45190000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:45185800-45189800	Weak transcription	Lung	lung
14	chr11:45186000-45190600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:45186000-45193000	Weak transcription	Primary B cells from peripheral blood	blood
16	chr11:45186200-45189400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:45186400-45190200	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:45186400-45190200	Weak transcription	Right Atrium	heart
19	chr11:45186400-45190400	Weak transcription	Left Ventricle	heart
20	chr11:45186400-45201200	Weak transcription	Brain Substantia Nigra	brain
21	chr11:45186600-45201400	Weak transcription	Fetal Brain Female	brain
22	chr11:45186800-45189600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr11:45186800-45190400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr11:45186800-45200600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr11:45187000-45188600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:45187000-45190400	Weak transcription	Right Ventricle	heart
27	chr11:45187200-45190400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr11:45187200-45190400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr11:45187400-45188400	Enhancers	Spleen	Spleen
30	chr11:45187400-45189800	Weak transcription	Ovary	ovary
31	chr11:45187600-45189000	Weak transcription	Fetal Brain Male	brain
32	chr11:45187600-45190200	Weak transcription	Fetal Heart	heart
33	chr11:45187800-45190000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr11:45188000-45190000	Weak transcription	Fetal Muscle Leg	muscle
35	chr11:45188200-45188400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:45188200-45189200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr11:45188200-45190200	Weak transcription	Fetal Stomach	stomach

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