Variant report

Variant	rs61397395
Chromosome Location	chr11:45207637-45207638
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45165683..45169162-chr11:45207183..45212021,4	K562	blood:
2	chr11:45166945..45168648-chr11:45207183..45208753,2	K562	blood:
3	chr11:45164160..45171283-chr11:45198764..45207868,26	MCF-7	breast:
4	chr11:45206693..45208681-chr11:45212656..45214385,2	K562	blood:
5	chr11:45201434..45203810-chr11:45205775..45209200,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000019485	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1078929	1.00[AFR][1000 genomes]
rs16938176	0.91[AFR][1000 genomes]
rs55909799	1.00[AFR][1000 genomes]
rs58370095	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825852	chr11:45141386-45228580	Bivalent/Poised TSS Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45202000-45220000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr11:45202800-45234000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr11:45203000-45208400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:45203000-45209600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:45203000-45213400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:45203000-45237000	Weak transcription	Small Intestine	intestine
7	chr11:45203200-45208400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:45203200-45209600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:45203200-45211000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:45203200-45212400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:45203200-45213000	Weak transcription	HSMM	muscle
12	chr11:45203200-45215200	Weak transcription	Psoas Muscle	Psoas
13	chr11:45203400-45209000	Weak transcription	Brain Angular Gyrus	brain
14	chr11:45203400-45209600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:45203400-45209600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr11:45203400-45209600	Weak transcription	Fetal Brain Male	brain
17	chr11:45203400-45210000	Weak transcription	NHLF	lung
18	chr11:45203400-45215200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr11:45203400-45217600	Weak transcription	NH-A	brain
20	chr11:45203400-45221200	Weak transcription	NHEK	skin
21	chr11:45203400-45230400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:45203400-45231000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr11:45203600-45210000	Strong transcription	Brain Germinal Matrix	brain
24	chr11:45203600-45210800	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr11:45203600-45210800	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr11:45203600-45211600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr11:45203600-45226200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:45203600-45231000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr11:45203800-45210200	Strong transcription	Primary B cells from peripheral blood	blood
30	chr11:45203800-45210400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr11:45203800-45210800	Strong transcription	Brain Cingulate Gyrus	brain
32	chr11:45203800-45212600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr11:45204000-45210400	Strong transcription	Fetal Brain Female	brain
34	chr11:45204200-45208200	Strong transcription	Skeletal Muscle Male	skeletal muscle
35	chr11:45204400-45209600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:45204400-45211600	Strong transcription	Ovary	ovary
37	chr11:45204400-45211800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr11:45204400-45213400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:45204600-45209000	Strong transcription	Primary B cells from cord blood	blood
40	chr11:45204600-45209000	Strong transcription	Spleen	Spleen
41	chr11:45204600-45210200	Strong transcription	Brain Anterior Caudate	brain
42	chr11:45204600-45210400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:45204600-45212600	Strong transcription	Fetal Muscle Leg	muscle
44	chr11:45204600-45213000	Strong transcription	Stomach Smooth Muscle	stomach
45	chr11:45204800-45210400	Strong transcription	Duodenum Mucosa	Duodenum
46	chr11:45204800-45211800	Strong transcription	Adipose Nuclei	Adipose
47	chr11:45204800-45214600	Strong transcription	Fetal Lung	lung
48	chr11:45205000-45208200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr11:45205000-45208800	Enhancers	K562	blood
50	chr11:45205000-45210400	Strong transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links