Variant report

Variant	rs58370095
Chromosome Location	chr11:45192940-45192941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1078929	0.95[AFR][1000 genomes]
rs16938176	0.87[AFR][1000 genomes]
rs55909799	0.95[AFR][1000 genomes]
rs61397395	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825852	chr11:45141386-45228580	Bivalent/Poised TSS Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv541025	chr11:45154352-45193352	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv1048493	chr11:45166054-45205695	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45180000-45193000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:45181600-45193600	Weak transcription	Fetal Intestine Large	intestine
3	chr11:45183600-45200400	Weak transcription	Esophagus	oesophagus
4	chr11:45183800-45201200	Weak transcription	Gastric	stomach
5	chr11:45186000-45193000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr11:45186400-45201200	Weak transcription	Brain Substantia Nigra	brain
7	chr11:45186600-45201400	Weak transcription	Fetal Brain Female	brain
8	chr11:45186800-45200600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:45188400-45193400	Weak transcription	Fetal Intestine Small	intestine
10	chr11:45190200-45193400	Enhancers	Right Atrium	heart
11	chr11:45190400-45193400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:45190600-45198400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr11:45191200-45199000	Weak transcription	Fetal Stomach	stomach
14	chr11:45191400-45195600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr11:45191600-45198400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr11:45191800-45198600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr11:45192200-45194400	Weak transcription	HepG2	liver
18	chr11:45192200-45198000	Weak transcription	Pancreas	Pancrea
19	chr11:45192200-45198400	Weak transcription	Fetal Muscle Leg	muscle
20	chr11:45192400-45193000	Weak transcription	Spleen	Spleen
21	chr11:45192400-45198400	Weak transcription	Ovary	ovary
22	chr11:45192400-45198400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr11:45192400-45198600	Weak transcription	Right Ventricle	heart
24	chr11:45192400-45200400	Weak transcription	Lung	lung
25	chr11:45192400-45201200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr11:45192600-45198800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:45192800-45193200	Weak transcription	Left Ventricle	heart

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