Variant report

Variant	rs16938364
Chromosome Location	chr11:45794325-45794326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45794213..45796251-chr11:45824531..45826219,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181830	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11821278	1.00[ASN][1000 genomes]
rs11823366	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs11824379	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12289963	1.00[ASN][1000 genomes]
rs16938365	0.85[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs16938366	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2467286	1.00[ASN][1000 genomes]
rs2593737	1.00[ASN][1000 genomes]
rs2593740	1.00[ASN][1000 genomes]
rs2593742	1.00[ASN][1000 genomes]
rs57825091	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58844328	1.00[ASN][1000 genomes]
rs61089715	1.00[ASN][1000 genomes]
rs73466337	1.00[ASN][1000 genomes]
rs73466369	1.00[ASN][1000 genomes]
rs73466372	1.00[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45792800-45794400	Flanking Active TSS	Primary B cells from cord blood	blood
2	chr11:45793600-45795600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:45793600-45796400	Enhancers	Fetal Brain Male	brain
4	chr11:45793600-45802200	Weak transcription	Spleen	Spleen
5	chr11:45793800-45794400	Enhancers	Primary B cells from peripheral blood	blood
6	chr11:45793800-45794400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:45793800-45794400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr11:45793800-45794800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr11:45793800-45795600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:45794000-45794400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr11:45794000-45794400	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr11:45794000-45794600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:45794000-45794600	Enhancers	Liver	Liver
14	chr11:45794000-45794600	Enhancers	Dnd41	blood
15	chr11:45794000-45794800	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr11:45794000-45794800	Enhancers	GM12878-XiMat	blood
17	chr11:45794000-45796600	Enhancers	Adipose Nuclei	Adipose
18	chr11:45794200-45794400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr11:45794200-45794400	Flanking Active TSS	Fetal Brain Female	brain
20	chr11:45794200-45794800	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr11:45794200-45795200	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr11:45794200-45795400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links