Variant report

Variant	rs16938365
Chromosome Location	chr11:45794809-45794810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11821278	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11823366	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs11824379	1.00[ASN][1000 genomes]
rs12289963	1.00[ASN][1000 genomes]
rs16938364	0.85[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs16938366	1.00[CHB][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2467286	1.00[ASN][1000 genomes]
rs2593737	1.00[ASN][1000 genomes]
rs2593740	1.00[ASN][1000 genomes]
rs2593742	1.00[ASN][1000 genomes]
rs57825091	1.00[ASN][1000 genomes]
rs58844328	1.00[ASN][1000 genomes]
rs61089715	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73466337	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73466369	1.00[ASN][1000 genomes]
rs73466372	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45793600-45795600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:45793600-45796400	Enhancers	Fetal Brain Male	brain
3	chr11:45793600-45802200	Weak transcription	Spleen	Spleen
4	chr11:45793800-45795600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:45794000-45796600	Enhancers	Adipose Nuclei	Adipose
6	chr11:45794200-45795200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr11:45794200-45795400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:45794400-45795200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr11:45794400-45795200	Enhancers	Fetal Brain Female	brain
10	chr11:45794600-45795600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr11:45794600-45797800	Weak transcription	Liver	Liver
12	chr11:45794800-45795200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr11:45794800-45795400	Enhancers	Primary T regulatory cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links