Variant report

Variant	rs11823366
Chromosome Location	chr11:45828332-45828333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:45827001..45828781-chr11:46403254..46405047,2	K562	blood:
2	chr11:45824002..45829445-chr11:45867072..45871709,12	MCF-7	breast:
3	chr11:45827843..45829820-chr11:86147830..86150732,2	MCF-7	breast:
4	chr11:45825531..45829159-chr11:45866510..45869041,3	K562	blood:
5	chr11:45823557..45830738-chr11:45863397..45877001,19	MCF-7	breast:
6	chr11:45828332..45831158-chr11:86511150..86513181,2	MCF-7	breast:
7	chr11:45827056..45829246-chr11:45881136..45883627,2	MCF-7	breast:
8	chr11:45827056..45829827-chr11:45868451..45870593,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000150687	Chromatin interaction
ENSG00000121671	Chromatin interaction
ENSG00000110492	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11821278	1.00[ASN][1000 genomes]
rs11824379	1.00[ASN][1000 genomes]
rs12289963	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938364	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs16938365	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs16938366	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2467286	1.00[ASN][1000 genomes]
rs2593737	1.00[ASN][1000 genomes]
rs2593740	1.00[ASN][1000 genomes]
rs2593742	1.00[ASN][1000 genomes]
rs57825091	1.00[ASN][1000 genomes]
rs58844328	1.00[ASN][1000 genomes]
rs61089715	1.00[ASN][1000 genomes]
rs61884469	0.80[EUR][1000 genomes]
rs61884470	0.80[EUR][1000 genomes]
rs73466337	1.00[ASN][1000 genomes]
rs73466369	1.00[ASN][1000 genomes]
rs73466372	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv897315	chr11:45817637-45838926	Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11823366	C11orf96	cis	cerebellum	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45825400-45828600	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr11:45827000-45828400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:45827000-45828600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr11:45827000-45828600	Flanking Active TSS	Dnd41	blood
5	chr11:45827000-45828800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:45827000-45829000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
7	chr11:45827000-45829000	Flanking Active TSS	Stomach Smooth Muscle	stomach
8	chr11:45827000-45829000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr11:45827000-45829400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:45827000-45829600	Flanking Active TSS	Fetal Brain Female	brain
11	chr11:45827200-45828400	Flanking Active TSS	Brain Anterior Caudate	brain
12	chr11:45827200-45828400	Flanking Active TSS	Fetal Lung	lung
13	chr11:45827200-45828600	Flanking Active TSS	Liver	Liver
14	chr11:45827200-45828600	Flanking Active TSS	HSMM	muscle
15	chr11:45827200-45828800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:45827200-45828800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr11:45827200-45829000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
18	chr11:45827200-45829200	Flanking Active TSS	GM12878-XiMat	blood
19	chr11:45827200-45829400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:45827200-45829600	Flanking Active TSS	Brain Germinal Matrix	brain
21	chr11:45827200-45829800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:45827400-45828400	Flanking Active TSS	NHDF-Ad	bronchial
23	chr11:45827400-45828600	Enhancers	Spleen	Spleen
24	chr11:45827400-45828800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:45827400-45828800	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr11:45827400-45828800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr11:45827400-45828800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr11:45827400-45829000	Flanking Active TSS	K562	blood
29	chr11:45827400-45829200	Flanking Active TSS	HUVEC	blood vessel
30	chr11:45827400-45829400	Flanking Active TSS	Rectal Smooth Muscle	rectum
31	chr11:45827400-45829400	Flanking Active TSS	NH-A	brain
32	chr11:45827400-45829600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:45827400-45829800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:45827400-45829800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr11:45827400-45830000	Enhancers	Small Intestine	intestine
36	chr11:45827400-45830200	Genic enhancers	Sigmoid Colon	Sigmoid Colon
37	chr11:45827600-45828400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:45827600-45828600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:45827600-45828600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:45827600-45828800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:45827600-45829200	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr11:45827600-45829200	Transcr. at gene 5' and 3'	NHLF	lung
43	chr11:45827600-45829400	Enhancers	Primary B cells from peripheral blood	blood
44	chr11:45827600-45829400	Enhancers	Fetal Thymus	thymus
45	chr11:45827600-45829600	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
46	chr11:45827600-45829600	Enhancers	Aorta	Aorta
47	chr11:45827600-45829600	Enhancers	Placenta Amnion	Placenta Amnion
48	chr11:45827600-45829600	Enhancers	Thymus	Thymus
49	chr11:45827600-45830000	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr11:45827600-45831600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin

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