Variant report

Variant	rs61884470
Chromosome Location	chr11:45821421-45821422
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11823366	0.80[EUR][1000 genomes]
rs12289963	0.80[EUR][1000 genomes]
rs61193268	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61884469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61884471	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61884495	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv897315	chr11:45817637-45838926	Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45816000-45823200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:45816000-45825400	Weak transcription	Gastric	stomach
3	chr11:45816400-45823200	Weak transcription	Stomach Mucosa	stomach
4	chr11:45818800-45825400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:45821000-45822800	Weak transcription	Lung	lung
6	chr11:45821200-45821600	Enhancers	Liver	Liver
7	chr11:45821200-45823400	Weak transcription	Placenta	Placenta
8	chr11:45821200-45826000	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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