Variant report

Variant	rs61884495
Chromosome Location	chr11:45834877-45834878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs61882469	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61882470	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61882473	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61882474	0.85[AMR][1000 genomes]
rs61882475	0.85[AMR][1000 genomes]
rs61884469	1.00[AFR][1000 genomes]
rs61884470	1.00[AFR][1000 genomes]
rs61884502	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61884503	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61884504	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61884505	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61884506	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61884508	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61884510	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv897315	chr11:45817637-45838926	Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45828000-45837200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:45828000-45837200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:45829200-45835000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:45829600-45835000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr11:45829600-45835200	Strong transcription	Fetal Stomach	stomach
6	chr11:45829600-45835800	Weak transcription	HSMM	muscle
7	chr11:45829600-45836000	Weak transcription	HepG2	liver
8	chr11:45829800-45835400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:45830200-45835000	Strong transcription	Fetal Intestine Small	intestine
10	chr11:45831200-45835000	Strong transcription	Fetal Muscle Leg	muscle
11	chr11:45831200-45837600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:45831600-45835000	Strong transcription	Dnd41	blood
13	chr11:45831600-45837400	Weak transcription	Hela-S3	cervix
14	chr11:45831800-45835000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:45832000-45838600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr11:45832200-45839600	Weak transcription	Fetal Heart	heart
17	chr11:45832800-45837200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr11:45833000-45837200	Weak transcription	A549	lung
19	chr11:45833200-45835400	Weak transcription	Psoas Muscle	Psoas
20	chr11:45833400-45835000	Weak transcription	Brain Substantia Nigra	brain
21	chr11:45833400-45835200	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr11:45833400-45835400	Weak transcription	Colon Smooth Muscle	Colon
23	chr11:45833600-45835000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr11:45833600-45835400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:45833600-45835800	Weak transcription	HUVEC	blood vessel
26	chr11:45833600-45837200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr11:45833600-45848000	Weak transcription	Right Ventricle	heart
28	chr11:45833800-45835600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr11:45833800-45835600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr11:45833800-45835800	Weak transcription	Osteobl	bone
31	chr11:45833800-45837200	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr11:45833800-45837400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:45833800-45837400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr11:45833800-45837600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr11:45833800-45837600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr11:45833800-45837600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr11:45833800-45838200	Weak transcription	GM12878-XiMat	blood
38	chr11:45833800-45838600	Weak transcription	Primary B cells from cord blood	blood
39	chr11:45833800-45841800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr11:45833800-45845400	Weak transcription	Ovary	ovary
41	chr11:45833800-45850000	Weak transcription	Brain Angular Gyrus	brain
42	chr11:45834000-45835400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:45834000-45835800	Weak transcription	Rectal Smooth Muscle	rectum
44	chr11:45834000-45835800	Weak transcription	Stomach Mucosa	stomach
45	chr11:45834000-45835800	Weak transcription	HMEC	breast
46	chr11:45834000-45836000	Weak transcription	NHEK	skin
47	chr11:45834000-45836200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr11:45834000-45836600	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr11:45834000-45836800	Weak transcription	NHDF-Ad	bronchial
50	chr11:45834000-45837400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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