Variant report

Variant	rs61882473
Chromosome Location	chr11:45908905-45908906
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45868641..45870553-chr11:45905537..45909020,4	K562	blood:
2	chr11:45907661..45910600-chr11:45912657..45914797,3	MCF-7	breast:
3	chr11:45892807..45894535-chr11:45907209..45909004,2	K562	blood:
4	chr11:45867854..45870393-chr11:45906869..45909551,2	MCF-7	breast:
5	chr11:45868680..45870553-chr11:45907106..45909020,2	K562	blood:
6	chr11:45907546..45909448-chr11:45934193..45936568,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000121671	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs61882469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61882470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61882474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61882475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61882476	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61884495	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61884499	1.00[AFR][1000 genomes]
rs61884502	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61884503	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61884504	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61884505	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61884506	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61884508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61884510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1047462	chr11:45898630-45953696	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv516442	chr11:45899962-45983385	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	esv1794798	chr11:45903280-45953636	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45907600-45912400	Weak transcription	Liver	Liver
2	chr11:45907600-45920800	Weak transcription	Right Atrium	heart
3	chr11:45908000-45909200	Flanking Active TSS	Fetal Brain Female	brain
4	chr11:45908000-45910000	Weak transcription	Esophagus	oesophagus
5	chr11:45908000-45912400	Weak transcription	Pancreas	Pancrea
6	chr11:45908000-45912800	Enhancers	Fetal Brain Male	brain
7	chr11:45908000-45913000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:45908200-45909400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:45908400-45909200	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:45908400-45909200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:45908400-45909400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:45908400-45914800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:45908400-45916200	Weak transcription	Brain Anterior Caudate	brain
14	chr11:45908600-45909200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:45908600-45909400	Enhancers	Brain Angular Gyrus	brain
16	chr11:45908600-45910000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:45908600-45912600	Weak transcription	Brain Hippocampus Middle	brain
18	chr11:45908600-45917600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr11:45908800-45909200	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr11:45908800-45909600	Enhancers	Brain Germinal Matrix	brain

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