Variant report

Variant	rs61882476
Chromosome Location	chr11:45914462-45914463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45906496..45909660-chr11:45910667..45914809,5	K562	blood:
2	chr11:45825139..45826817-chr11:45912487..45914933,2	MCF-7	breast:
3	chr11:45911137..45915484-chr11:45918170..45921125,3	MCF-7	breast:
4	chr11:45907661..45910600-chr11:45912657..45914797,3	MCF-7	breast:
5	chr11:45913514..45915838-chr11:45927907..45930385,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255498	Chromatin interaction
ENSG00000181830	Chromatin interaction
ENSG00000121653	Chromatin interaction
ENSG00000234776	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs61882469	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61882470	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61882473	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61882474	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61882475	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61884505	0.85[EUR][1000 genomes]
rs61884506	0.85[EUR][1000 genomes]
rs61884508	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61884510	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1047462	chr11:45898630-45953696	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv516442	chr11:45899962-45983385	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	esv1794798	chr11:45903280-45953636	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	esv1805505	chr11:45912324-45956109	Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45907600-45920800	Weak transcription	Right Atrium	heart
2	chr11:45908400-45914800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:45908400-45916200	Weak transcription	Brain Anterior Caudate	brain
4	chr11:45908600-45917600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:45910000-45917400	Weak transcription	Fetal Brain Female	brain
6	chr11:45912400-45915200	Enhancers	Liver	Liver
7	chr11:45912800-45916200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:45912800-45916400	Weak transcription	Fetal Brain Male	brain
9	chr11:45913200-45914600	Strong transcription	Brain Germinal Matrix	brain
10	chr11:45913400-45916200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:45913400-45916200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:45914000-45915000	Enhancers	Brain Hippocampus Middle	brain
13	chr11:45914000-45916200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:45914000-45920400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:45914200-45915000	Enhancers	Brain Angular Gyrus	brain
16	chr11:45914200-45915400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr11:45914400-45914600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:45914400-45914600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:45914400-45914600	Enhancers	Fetal Muscle Leg	muscle
20	chr11:45914400-45915200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:45914400-45915200	Enhancers	Brain Substantia Nigra	brain
22	chr11:45914400-45915400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:45914400-45915400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr11:45914400-45915400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:45914400-45915600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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