Variant report

Variant	rs61882475
Chromosome Location	chr11:45913104-45913105
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs61882469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61882470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61882473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61882474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61882476	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61884495	0.85[AMR][1000 genomes]
rs61884499	1.00[AFR][1000 genomes]
rs61884502	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61884503	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61884504	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61884505	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61884506	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61884508	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61884510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1047462	chr11:45898630-45953696	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv516442	chr11:45899962-45983385	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	esv1794798	chr11:45903280-45953636	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	esv1805505	chr11:45912324-45956109	Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45907600-45920800	Weak transcription	Right Atrium	heart
2	chr11:45908400-45914800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:45908400-45916200	Weak transcription	Brain Anterior Caudate	brain
4	chr11:45908600-45917600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:45909400-45914200	Weak transcription	Brain Angular Gyrus	brain
6	chr11:45909600-45913200	Weak transcription	Brain Germinal Matrix	brain
7	chr11:45910000-45917400	Weak transcription	Fetal Brain Female	brain
8	chr11:45911800-45914400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:45912400-45915200	Enhancers	Liver	Liver
10	chr11:45912600-45913400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:45912600-45913600	Enhancers	Brain Hippocampus Middle	brain
12	chr11:45912800-45913400	Enhancers	Brain Cingulate Gyrus	brain
13	chr11:45912800-45916200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr11:45912800-45916400	Weak transcription	Fetal Brain Male	brain
15	chr11:45913000-45913200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr11:45913000-45913200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:45913000-45913600	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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