Variant report

Variant	rs61884503
Chromosome Location	chr11:45855389-45855390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs61882469	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61882470	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61882473	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61882474	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61882475	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61884495	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61884499	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs61884502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61884504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61884505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61884506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61884508	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61884510	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45845800-45869000	Weak transcription	Right Atrium	heart
2	chr11:45846000-45855800	Weak transcription	Ovary	ovary
3	chr11:45848400-45855800	Weak transcription	Left Ventricle	heart
4	chr11:45851800-45855800	Weak transcription	Adipose Nuclei	Adipose
5	chr11:45853600-45856000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:45854000-45856400	Enhancers	Placenta	Placenta
7	chr11:45854400-45856400	Flanking Active TSS	Dnd41	blood
8	chr11:45854600-45856400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:45854800-45856600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr11:45855200-45855800	Enhancers	K562	blood
11	chr11:45855200-45856000	Enhancers	Hela-S3	cervix
12	chr11:45855200-45856200	Enhancers	Primary T cells fromperipheralblood	blood
13	chr11:45855200-45856400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr11:45855200-45856400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr11:45855200-45856400	Enhancers	Primary T helper naive cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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