Variant report

Variant	rs16939427
Chromosome Location	chr8:78033770-78033771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10086637	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10095652	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11990859	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11992889	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1470834	0.82[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16939431	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16939459	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16939460	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16939462	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1840079	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4644212	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7004978	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs716468	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891045	chr8:77998659-78477561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1020007	chr8:78021376-78059834	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78031600-78033800	Weak transcription	HMEC	breast
2	chr8:78032800-78033800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:78032800-78033800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:78032800-78033800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:78032800-78033800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr8:78032800-78033800	Weak transcription	Brain Germinal Matrix	brain
7	chr8:78032800-78034000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:78032800-78034000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:78032800-78037800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:78033000-78034000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr8:78033400-78034200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:78033400-78034200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:78033600-78034200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr8:78033600-78034200	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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