Variant report

Variant	rs16939431
Chromosome Location	chr8:78042819-78042820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10086637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10095652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11990859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11992889	0.82[EUR][1000 genomes]
rs1470834	0.82[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16939427	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16939459	0.82[EUR][1000 genomes]
rs16939460	0.82[EUR][1000 genomes]
rs16939462	0.82[EUR][1000 genomes]
rs1840079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4644212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7004978	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs716468	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891045	chr8:77998659-78477561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1020007	chr8:78021376-78059834	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78041400-78043400	Enhancers	Fetal Heart	heart
2	chr8:78041600-78043200	Enhancers	Brain Germinal Matrix	brain
3	chr8:78042600-78043000	Enhancers	HSMM	muscle
4	chr8:78042600-78043400	Enhancers	Fetal Brain Male	brain
5	chr8:78042800-78043000	Active TSS	Brain Cingulate Gyrus	brain
6	chr8:78042800-78043000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
7	chr8:78042800-78043000	Enhancers	Brain Substantia Nigra	brain
8	chr8:78042800-78043000	Enhancers	Fetal Muscle Leg	muscle
9	chr8:78042800-78043200	Active TSS	Brain Anterior Caudate	brain
10	chr8:78042800-78043400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:78042800-78043400	Flanking Active TSS	Brain Hippocampus Middle	brain
12	chr8:78042800-78043400	Enhancers	Dnd41	blood
13	chr8:78042800-78043600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr8:78042800-78043600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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