Variant report

Variant	rs16939460
Chromosome Location	chr8:78126765-78126766
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10086637	0.82[EUR][1000 genomes]
rs10095652	0.82[EUR][1000 genomes]
rs11990859	0.82[EUR][1000 genomes]
rs11992889	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470834	1.00[CEU][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16939427	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16939431	0.82[EUR][1000 genomes]
rs16939459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16939462	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1840079	0.82[EUR][1000 genomes]
rs4644212	0.82[EUR][1000 genomes]
rs7004978	0.82[EUR][1000 genomes]
rs716468	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891045	chr8:77998659-78477561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1029314	chr8:78107849-78129934	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
3	esv2756011	chr8:78108034-78160132	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
4	nsv611566	chr8:78126326-78245535	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78126400-78128800	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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