Variant report

Variant	rs16939845
Chromosome Location	chr15:87628046-87628047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:87625900..87629633-chr15:87631461..87633717,3	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1010418	0.83[ASN][1000 genomes]
rs11073687	0.83[ASN][1000 genomes]
rs16939835	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17796450	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1865188	1.00[ASN][1000 genomes]
rs55750101	1.00[ASN][1000 genomes]
rs55889073	1.00[ASN][1000 genomes]
rs55968056	1.00[ASN][1000 genomes]
rs56371043	1.00[ASN][1000 genomes]
rs57104602	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59152382	1.00[ASN][1000 genomes]
rs61267860	1.00[ASN][1000 genomes]
rs7178798	1.00[ASN][1000 genomes]
rs7178977	1.00[ASN][1000 genomes]
rs72754052	1.00[ASN][1000 genomes]
rs72754053	1.00[ASN][1000 genomes]
rs72754070	1.00[ASN][1000 genomes]
rs72754071	1.00[ASN][1000 genomes]
rs72754074	1.00[ASN][1000 genomes]
rs72754081	1.00[ASN][1000 genomes]
rs72755640	1.00[ASN][1000 genomes]
rs72755696	1.00[ASN][1000 genomes]
rs72757450	1.00[ASN][1000 genomes]
rs72757451	1.00[ASN][1000 genomes]
rs72757453	1.00[ASN][1000 genomes]
rs72757455	1.00[ASN][1000 genomes]
rs72757456	1.00[ASN][1000 genomes]
rs72757457	1.00[ASN][1000 genomes]
rs72757458	1.00[ASN][1000 genomes]
rs72757459	1.00[ASN][1000 genomes]
rs72757461	1.00[ASN][1000 genomes]
rs72757462	1.00[ASN][1000 genomes]
rs72757463	1.00[ASN][1000 genomes]
rs72757465	1.00[ASN][1000 genomes]
rs72757466	1.00[ASN][1000 genomes]
rs72757467	1.00[ASN][1000 genomes]
rs72757468	1.00[ASN][1000 genomes]
rs72757471	1.00[ASN][1000 genomes]
rs72757473	1.00[ASN][1000 genomes]
rs72757475	1.00[ASN][1000 genomes]
rs73449117	0.83[ASN][1000 genomes]
rs73449118	0.83[ASN][1000 genomes]
rs73449121	0.83[ASN][1000 genomes]
rs73449126	0.83[ASN][1000 genomes]
rs74025747	0.83[ASN][1000 genomes]
rs74025750	0.83[ASN][1000 genomes]
rs8023616	0.83[ASN][1000 genomes]
rs8031800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs8032971	0.83[ASN][1000 genomes]
rs8033002	0.83[ASN][1000 genomes]
rs8033797	0.83[ASN][1000 genomes]
rs8035129	0.83[ASN][1000 genomes]
rs8037455	0.83[ASN][1000 genomes]
rs8037857	0.83[ASN][1000 genomes]
rs8037899	0.83[ASN][1000 genomes]
rs8038098	0.83[ASN][1000 genomes]
rs8038215	0.83[ASN][1000 genomes]
rs8039824	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039254	chr15:87070357-87942988	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv533986	chr15:87100872-87633926	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1039005	chr15:87228489-87813438	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv542465	chr15:87228489-87813438	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1044157	chr15:87458558-88101699	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv428646	chr15:87612249-87759363	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:87609800-87633000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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