Variant report

Variant	rs16945760
Chromosome Location	chr13:91969677-91969678
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:91954347..91956053-chr13:91969045..91970728,2	K562	blood:
2	chr13:91956069..91957781-chr13:91969431..91970993,2	K562	blood:
3	chr13:91967595..91969691-chr13:91969721..91972624,2	MCF-7	breast:
4	chr13:91960584..91967004-chr13:91967143..91971210,7	K562	blood:
5	chr13:91968649..91970758-chr13:91998727..92001033,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000215417	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1041533	1.00[ASN][1000 genomes]
rs10454517	1.00[JPT][hapmap]
rs10454554	1.00[ASN][1000 genomes]
rs12184537	1.00[ASN][1000 genomes]
rs1332221	1.00[JPT][hapmap]
rs1556465	1.00[ASN][1000 genomes]
rs16945595	1.00[JPT][hapmap]
rs16945754	1.00[ASN][1000 genomes]
rs16945757	1.00[ASN][1000 genomes]
rs2882664	1.00[YRI][hapmap]
rs58925550	1.00[ASN][1000 genomes]
rs7318410	1.00[JPT][hapmap]
rs7336155	1.00[JPT][hapmap]
rs7358999	1.00[JPT][hapmap]
rs7988725	1.00[ASN][1000 genomes]
rs7989029	1.00[JPT][hapmap]
rs7989392	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9301723	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs952997	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs9589133	1.00[JPT][hapmap]
rs9589149	1.00[JPT][hapmap]
rs9589150	1.00[JPT][hapmap]
rs9589151	1.00[JPT][hapmap]
rs9589154	1.00[JPT][hapmap]
rs9589155	1.00[JPT][hapmap]
rs9589157	1.00[JPT][hapmap]
rs9589169	1.00[ASN][1000 genomes]
rs9589172	1.00[ASN][1000 genomes]
rs9589173	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs987770	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
2	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
3	esv1803618	chr13:91669587-92277699	Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1945 gene(s)	inside rSNPs	diseases
4	nsv1050259	chr13:91759549-92152078	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1944 gene(s)	inside rSNPs	diseases
5	nsv541872	chr13:91759549-92152078	Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1944 gene(s)	inside rSNPs	diseases
6	nsv832679	chr13:91859467-92030220	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1943 gene(s)	inside rSNPs	diseases
7	nsv510620	chr13:91945174-91997422	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:91966400-91970800	Weak transcription	GM12878-XiMat	blood
2	chr13:91966400-91975000	Weak transcription	Dnd41	blood

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