Variant report

Variant	rs7989392
Chromosome Location	chr13:91909216-91909217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:91887329..91890707-chr13:91908939..91913306,4	K562	blood:
2	chr13:91906024..91907715-chr13:91909049..91911463,2	K562	blood:
3	chr13:91906437..91909303-chr13:91916493..91918143,2	K562	blood:
4	chr13:91907666..91909561-chr13:92007500..92010207,2	K562	blood:
5	chr13:91907805..91909994-chr13:92010995..92013406,3	K562	blood:
6	chr13:91901797..91903631-chr13:91908143..91910086,2	K562	blood:
7	chr13:91909152..91910913-chr13:91998865..92000833,2	K562	blood:
8	chr13:91908077..91911609-chr13:91997821..92003211,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000215417	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1041533	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10454517	1.00[JPT][hapmap]
rs10454554	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12184537	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1332221	1.00[JPT][hapmap]
rs1556465	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16945595	1.00[JPT][hapmap]
rs16945754	1.00[ASN][1000 genomes]
rs16945757	1.00[ASN][1000 genomes]
rs16945760	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4409955	0.83[AMR][1000 genomes]
rs58925550	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7318410	1.00[JPT][hapmap]
rs7336155	1.00[JPT][hapmap]
rs7358999	1.00[JPT][hapmap]
rs7983702	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7988725	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7989029	1.00[JPT][hapmap]
rs9301723	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs952997	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9583906	1.00[AMR][1000 genomes]
rs9589133	1.00[JPT][hapmap]
rs9589149	1.00[JPT][hapmap]
rs9589150	1.00[JPT][hapmap]
rs9589151	1.00[JPT][hapmap]
rs9589154	1.00[JPT][hapmap]
rs9589155	1.00[JPT][hapmap]
rs9589156	0.83[AMR][1000 genomes]
rs9589157	1.00[JPT][hapmap]
rs9589169	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9589172	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9589173	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs987770	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
2	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
3	esv1803618	chr13:91669587-92277699	Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1945 gene(s)	inside rSNPs	diseases
4	nsv1050259	chr13:91759549-92152078	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1944 gene(s)	inside rSNPs	diseases
5	nsv541872	chr13:91759549-92152078	Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1944 gene(s)	inside rSNPs	diseases
6	nsv832678	chr13:91771619-91932241	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2756433	chr13:91841599-91968099	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv832679	chr13:91859467-92030220	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1943 gene(s)	inside rSNPs	diseases
9	nsv976220	chr13:91903076-91913219	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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