Variant report

Variant	rs16947580
Chromosome Location	chr13:93074649-93074650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2209838	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2374012	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs41536645	0.81[CEU][hapmap]
rs73632216	0.88[EUR][1000 genomes]
rs7990928	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7994769	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9301806	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9561043	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9561049	0.88[EUR][1000 genomes]
rs9561050	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832680	chr13:93021114-93181489	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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