Variant report

Variant	rs9561050
Chromosome Location	chr13:93101988-93101989
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16947580	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap]
rs2209838	0.82[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap]
rs2374012	0.92[CEU][hapmap];0.80[CHD][hapmap];0.95[TSI][hapmap]
rs73632216	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7990928	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7994769	0.82[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap]
rs9301806	0.89[CHB][hapmap]
rs9561043	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs9561049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832680	chr13:93021114-93181489	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93101400-93102000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:93101600-93102800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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