Variant report

Variant	rs16952402
Chromosome Location	chr16:80147686-80147687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16952228	0.83[AMR][1000 genomes]
rs16952518	0.84[AFR][1000 genomes]
rs57824584	1.00[AMR][1000 genomes]
rs57899846	1.00[AMR][1000 genomes]
rs57929477	0.83[AMR][1000 genomes]
rs59612196	0.93[AFR][1000 genomes]
rs73583891	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73583892	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73585959	0.83[AMR][1000 genomes]
rs73585965	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73587905	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73589923	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73589930	0.84[AFR][1000 genomes]
rs73589947	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80138000-80156000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr16:80140200-80151200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr16:80143000-80148000	Weak transcription	HMEC	breast
4	chr16:80143400-80151000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr16:80146400-80148000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr16:80147200-80148400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr16:80147600-80148200	Enhancers	NHEK	skin
8	chr16:80147600-80148400	Enhancers	Ovary	ovary
9	chr16:80147600-80148600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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