Variant report
| Variant | rs73589930 |
|---|---|
| Chromosome Location | chr16:80166256-80166257 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:80164328..80166827-chr16:80167258..80169658,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs12324941 | 0.91[AFR][1000 genomes] |
| rs12325020 | 0.91[AFR][1000 genomes] |
| rs16952402 | 0.84[AFR][1000 genomes] |
| rs16952472 | 1.00[AMR][1000 genomes] |
| rs16952518 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4888078 | 0.91[AFR][1000 genomes] |
| rs57929477 | 0.83[AMR][1000 genomes] |
| rs59612196 | 0.84[AFR][1000 genomes] |
| rs73571931 | 0.80[AFR][1000 genomes] |
| rs73583891 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs73583892 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs73585959 | 0.83[AMR][1000 genomes] |
| rs73585965 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs73587905 | 0.94[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs73587910 | 1.00[AMR][1000 genomes] |
| rs73589923 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs73589928 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73589947 | 0.97[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv906995 | chr16:80094975-80166677 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv833298 | chr16:80122337-80314603 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1055982 | chr16:80151604-80202923 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:80165800-80167000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
