Variant report

Variant	rs73571931
Chromosome Location	chr16:80184890-80184891
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12324941	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12325020	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952518	0.80[AFR][1000 genomes]
rs16952519	0.89[AMR][1000 genomes]
rs28645719	0.89[AMR][1000 genomes]
rs4888078	0.89[AFR][1000 genomes]
rs73571919	0.89[AMR][1000 genomes]
rs73571920	0.89[AMR][1000 genomes]
rs73587905	0.87[AMR][1000 genomes]
rs73589923	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73589930	0.80[AFR][1000 genomes]
rs73589947	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9941188	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80181000-80185200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr16:80183600-80186600	Enhancers	Ovary	ovary
3	chr16:80183800-80186600	Enhancers	Fetal Muscle Leg	muscle
4	chr16:80184000-80186600	Enhancers	Osteobl	bone
5	chr16:80184200-80185200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr16:80184200-80186600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr16:80184200-80186600	Enhancers	HSMMtube	muscle
8	chr16:80184200-80186600	Enhancers	NHDF-Ad	bronchial
9	chr16:80184400-80186600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr16:80184400-80186600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr16:80184400-80186600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr16:80184600-80185000	Weak transcription	HSMM	muscle
13	chr16:80184600-80186400	Enhancers	NH-A	brain
14	chr16:80184800-80185600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr16:80184800-80186000	Enhancers	Colon Smooth Muscle	Colon
16	chr16:80184800-80186600	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr16:80184800-80186600	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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