Variant report

Variant	rs16952519
Chromosome Location	chr16:80179155-80179156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12324941	0.89[AMR][1000 genomes]
rs12325020	0.89[AMR][1000 genomes]
rs16952360	0.89[AMR][1000 genomes]
rs16952361	0.89[AMR][1000 genomes]
rs16952363	0.89[AMR][1000 genomes]
rs16952367	0.89[AMR][1000 genomes]
rs16952390	0.89[AMR][1000 genomes]
rs16952423	0.89[AMR][1000 genomes]
rs16952439	0.89[AMR][1000 genomes]
rs16952442	0.89[AMR][1000 genomes]
rs16952521	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs16952527	0.90[AMR][1000 genomes]
rs28645719	1.00[AMR][1000 genomes]
rs28689188	0.90[AMR][1000 genomes]
rs28806170	0.90[AMR][1000 genomes]
rs60927300	0.89[AMR][1000 genomes]
rs7201069	0.89[YRI][hapmap]
rs73571910	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73571919	1.00[AMR][1000 genomes]
rs73571920	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73571931	0.89[AMR][1000 genomes]
rs73583898	0.89[AMR][1000 genomes]
rs73585976	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73585982	0.89[AMR][1000 genomes]
rs73589947	0.89[AMR][1000 genomes]
rs9930129	0.90[AMR][1000 genomes]
rs9939206	0.90[AMR][1000 genomes]
rs9941188	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80178600-80180600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr16:80178600-80180800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr16:80178800-80180400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr16:80178800-80180400	Weak transcription	HSMMtube	muscle
5	chr16:80178800-80180400	Weak transcription	NHDF-Ad	bronchial
6	chr16:80178800-80180400	Weak transcription	Osteobl	bone
7	chr16:80178800-80180800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr16:80178800-80180800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr16:80178800-80181200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr16:80179000-80180400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr16:80179000-80180400	Weak transcription	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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