Variant report

Variant	rs16952363
Chromosome Location	chr16:80143224-80143225
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:80138093..80140462-chr16:80142206..80144298,2	MCF-7	breast:
2	chr16:80141826..80144611-chr16:80145163..80147859,2	K562	blood:
3	chr16:80139089..80140824-chr16:80141061..80144366,3	MCF-7	breast:
4	chr16:80142621..80144359-chr16:80146389..80148832,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10514481	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16952297	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16952319	0.81[AFR][1000 genomes]
rs16952339	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952360	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16952361	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16952367	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16952390	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952423	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16952439	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952442	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16952472	1.00[EUR][1000 genomes]
rs16952519	0.89[AMR][1000 genomes]
rs2126998	1.00[EUR][1000 genomes]
rs28645719	0.89[AMR][1000 genomes]
rs4889097	1.00[EUR][1000 genomes]
rs5009136	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57189314	1.00[EUR][1000 genomes]
rs57824584	1.00[EUR][1000 genomes]
rs57899846	1.00[EUR][1000 genomes]
rs57929477	1.00[EUR][1000 genomes]
rs60927300	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73571919	0.89[AMR][1000 genomes]
rs73571920	0.89[AMR][1000 genomes]
rs73583872	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73583885	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73583898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73585959	1.00[EUR][1000 genomes]
rs73585976	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73585982	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73587910	1.00[EUR][1000 genomes]
rs9941188	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80138000-80156000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr16:80140200-80151200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr16:80142000-80143400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr16:80142600-80145800	Weak transcription	NHEK	skin
5	chr16:80143000-80148000	Weak transcription	HMEC	breast
6	chr16:80143200-80143600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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