Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80146986..80149039-chr16:80150822..80152607,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10514481	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16952297	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16952339	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952360	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952361	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952363	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952367	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952390	0.94[AFR][1000 genomes]
rs16952423	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952442	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952472	1.00[EUR][1000 genomes]
rs16952519	0.89[AMR][1000 genomes]
rs16952521	1.00[AMR][1000 genomes]
rs2126998	1.00[EUR][1000 genomes]
rs28645719	0.89[AMR][1000 genomes]
rs4889097	1.00[EUR][1000 genomes]
rs5009136	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57189314	1.00[EUR][1000 genomes]
rs57824584	1.00[EUR][1000 genomes]
rs57899846	1.00[EUR][1000 genomes]
rs57929477	1.00[EUR][1000 genomes]
rs73571910	1.00[AMR][1000 genomes]
rs73571919	0.89[AMR][1000 genomes]
rs73571920	0.89[AMR][1000 genomes]
rs73583872	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73583885	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73583898	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73585959	1.00[EUR][1000 genomes]
rs73585976	0.83[AFR][1000 genomes]
rs73585982	0.84[AFR][1000 genomes]
rs73587910	1.00[EUR][1000 genomes]
rs9923633	0.89[AMR][1000 genomes]
rs9941188	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80138000-80156000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr16:80148400-80156000	Weak transcription	Ovary	ovary
3	chr16:80148600-80155600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr16:80151200-80152200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr16:80151400-80152200	Enhancers	NHEK	skin
6	chr16:80151800-80153800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr16:80151800-80154600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr16:80151800-80154600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr16:80151800-80159600	Weak transcription	Adipose Nuclei	Adipose
10	chr16:80152000-80155000	Weak transcription	Fetal Lung	lung

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