Variant report

Variant	rs28806170
Chromosome Location	chr16:80168872-80168873
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16952519	0.90[AMR][1000 genomes]
rs16952527	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28645719	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28689188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73571919	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73571920	0.90[AMR][1000 genomes]
rs9923633	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9930129	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9939206	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9941188	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3385525	chr16:80168065-80170628	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80168600-80169400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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