Variant report

Variant	rs16952527
Chromosome Location	chr16:80182536-80182537
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16952519	0.90[AMR][1000 genomes]
rs28645719	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28689188	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28806170	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73571919	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73571920	0.90[AMR][1000 genomes]
rs9923633	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9930129	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9939206	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9941188	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80181000-80185200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr16:80181200-80184600	Weak transcription	NH-A	brain
3	chr16:80181400-80184400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr16:80181800-80184400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr16:80182000-80184200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr16:80182000-80184200	Weak transcription	NHDF-Ad	bronchial
7	chr16:80182000-80184400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr16:80182200-80182600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr16:80182400-80182600	Enhancers	Fetal Muscle Leg	muscle
10	chr16:80182400-80184200	Weak transcription	HSMMtube	muscle
11	chr16:80182400-80184400	Weak transcription	HSMM	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links