Variant report

Variant	rs16952518
Chromosome Location	chr16:80178179-80178180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12324941	0.91[AFR][1000 genomes]
rs12325020	0.91[AFR][1000 genomes]
rs16952402	0.84[AFR][1000 genomes]
rs16952472	1.00[AMR][1000 genomes]
rs4888078	0.91[AFR][1000 genomes]
rs57929477	0.83[AMR][1000 genomes]
rs59612196	0.84[AFR][1000 genomes]
rs73571931	0.80[AFR][1000 genomes]
rs73583891	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73583892	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73585959	0.83[AMR][1000 genomes]
rs73585965	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73587905	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73587910	1.00[AMR][1000 genomes]
rs73589923	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73589928	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73589930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73589947	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80176200-80178800	Enhancers	HepG2	liver
2	chr16:80178000-80178800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr16:80178000-80178800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr16:80178000-80178800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr16:80178000-80178800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr16:80178000-80178800	Enhancers	HSMMtube	muscle
7	chr16:80178000-80178800	Enhancers	NH-A	brain
8	chr16:80178000-80178800	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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