Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10514482	0.83[AFR][1000 genomes]
rs1110763	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1110764	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1545758	0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1545759	0.94[EUR][1000 genomes]
rs16952408	0.95[EUR][1000 genomes]
rs16952436	0.83[AFR][1000 genomes]
rs16952455	0.95[EUR][1000 genomes]
rs16952464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17788486	0.92[EUR][1000 genomes]
rs17794152	0.93[EUR][1000 genomes]
rs2016208	0.96[EUR][1000 genomes]
rs4888073	0.97[EUR][1000 genomes]
rs4888074	0.92[EUR][1000 genomes]
rs58957478	0.92[EUR][1000 genomes]
rs62050833	0.95[EUR][1000 genomes]
rs62050836	1.00[EUR][1000 genomes]
rs62050838	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62050840	0.95[EUR][1000 genomes]
rs62050842	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62050843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62050846	0.95[EUR][1000 genomes]
rs62050847	0.95[EUR][1000 genomes]
rs7191610	0.92[EUR][1000 genomes]
rs9806796	0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80158400-80162200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr16:80159000-80159800	Enhancers	Stomach Smooth Muscle	stomach
3	chr16:80159000-80160200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr16:80159000-80160200	Enhancers	HSMMtube	muscle
5	chr16:80159200-80160000	Enhancers	Ovary	ovary
6	chr16:80159200-80160400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr16:80159600-80159800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr16:80159600-80159800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr16:80159600-80160000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr16:80159600-80160000	Enhancers	Right Ventricle	heart
11	chr16:80159600-80160200	Enhancers	Adipose Nuclei	Adipose

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