Variant report
| Variant | rs17794152 |
|---|---|
| Chromosome Location | chr16:80163637-80163638 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1110763 | 0.92[EUR][1000 genomes] |
| rs1110764 | 0.92[EUR][1000 genomes] |
| rs1545758 | 0.92[EUR][1000 genomes] |
| rs1545759 | 0.87[EUR][1000 genomes] |
| rs16952408 | 0.96[EUR][1000 genomes] |
| rs16952455 | 0.96[EUR][1000 genomes] |
| rs16952464 | 0.92[EUR][1000 genomes] |
| rs16952477 | 0.93[EUR][1000 genomes] |
| rs17788486 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2016208 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4888073 | 0.91[EUR][1000 genomes] |
| rs4888074 | 0.93[EUR][1000 genomes] |
| rs58957478 | 0.86[EUR][1000 genomes] |
| rs62050833 | 0.96[EUR][1000 genomes] |
| rs62050836 | 0.93[EUR][1000 genomes] |
| rs62050838 | 0.92[EUR][1000 genomes] |
| rs62050840 | 0.96[EUR][1000 genomes] |
| rs62050842 | 0.91[EUR][1000 genomes] |
| rs62050843 | 0.92[EUR][1000 genomes] |
| rs62050846 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62050847 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7191610 | 0.86[EUR][1000 genomes] |
| rs9806796 | 0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv906995 | chr16:80094975-80166677 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv833298 | chr16:80122337-80314603 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1055982 | chr16:80151604-80202923 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:80162200-80164800 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
