Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1110763	0.96[EUR][1000 genomes]
rs1110764	0.96[EUR][1000 genomes]
rs1545758	0.93[EUR][1000 genomes]
rs1545759	0.88[EUR][1000 genomes]
rs16952408	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16952455	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16952464	0.96[EUR][1000 genomes]
rs16952477	0.95[EUR][1000 genomes]
rs17788486	0.97[EUR][1000 genomes]
rs17794152	0.96[EUR][1000 genomes]
rs2016208	0.99[EUR][1000 genomes]
rs2219778	0.96[ASN][1000 genomes]
rs4888073	0.92[EUR][1000 genomes]
rs4888074	0.95[EUR][1000 genomes]
rs58957478	0.87[EUR][1000 genomes]
rs62050833	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62050836	0.95[EUR][1000 genomes]
rs62050838	0.93[EUR][1000 genomes]
rs62050842	0.95[EUR][1000 genomes]
rs62050843	0.96[EUR][1000 genomes]
rs62050846	1.00[EUR][1000 genomes]
rs62050847	1.00[EUR][1000 genomes]
rs7191610	0.87[EUR][1000 genomes]
rs9806796	0.93[EUR][1000 genomes]
rs9806833	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80138000-80156000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr16:80148400-80156000	Weak transcription	Ovary	ovary
3	chr16:80148600-80155600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr16:80151800-80159600	Weak transcription	Adipose Nuclei	Adipose
5	chr16:80153800-80155400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr16:80154400-80155600	Enhancers	HMEC	breast
7	chr16:80154400-80156800	Enhancers	Brain Germinal Matrix	brain
8	chr16:80154600-80155400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr16:80154600-80155400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr16:80154600-80155400	Enhancers	Esophagus	oesophagus
11	chr16:80154600-80155400	Enhancers	Fetal Muscle Leg	muscle
12	chr16:80154800-80155200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr16:80154800-80156000	Weak transcription	Psoas Muscle	Psoas
14	chr16:80154800-80156800	Enhancers	Fetal Stomach	stomach
15	chr16:80155000-80155200	Enhancers	Placenta Amnion	Placenta Amnion
16	chr16:80155000-80155400	Flanking Active TSS	NHEK	skin
17	chr16:80155000-80156800	Enhancers	Fetal Lung	lung

Quick Search: