Variant report

Variant	rs16952546
Chromosome Location	chr16:80190136-80190137
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12102804	0.86[ASN][1000 genomes]
rs16952547	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1871209	0.82[ASN][1000 genomes]
rs28733382	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4889112	0.80[ASN][1000 genomes]
rs4889115	0.86[ASN][1000 genomes]
rs7189918	0.83[ASN][1000 genomes]
rs7193651	0.81[ASN][1000 genomes]
rs7205467	0.85[ASN][1000 genomes]
rs8045772	0.87[ASN][1000 genomes]
rs8045952	0.82[ASN][1000 genomes]
rs9673176	0.82[ASN][1000 genomes]
rs9673185	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80186400-80191800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr16:80186400-80191800	Weak transcription	NH-A	brain
3	chr16:80186600-80191200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr16:80186600-80191600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr16:80186600-80191800	Weak transcription	Osteobl	bone
6	chr16:80186600-80192600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr16:80186600-80197600	Weak transcription	HSMMtube	muscle
8	chr16:80189800-80190400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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